CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182036_ssr156 microsatellite CN182036_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2301 contig Csv1_Contig2301:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_YERPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=metE PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.657e-43
Identity = 91/179 (50.84%), Postives = 115/179 (64.25%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L +AL+   D   A  ++ +A   +R+SS RV N  V++  AA+   D  R     AR + Q+K+ NLP  PTTTIGSFPQT ++R +R +FK  ++   +Y   I E I + +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCAELALLTQALNAPNDAKLAELAAYSAPIRARRSSSRVHNAQVEQRLAAITSQDIERQLPYEARAETQRKRFNLPAWPTTTIGSFPQTTEIRGLRLDFKQGRLDGKNYRTGISEHIKHAIAEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 523          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_YERPS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pseudotuberculosis GN=metE PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.164e-43
Identity = 91/179 (50.84%), Postives = 114/179 (63.69%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L +AL+   D   A  ++ +A   +R+SS RV N  V++  AA+   D  R     AR + Q+K+ NLP  PTTTIGSFPQT ++R +R +FK  ++   +Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCAELALLTQALNAPNDAKLAELAAYSAPIRARRSSSRVHNAQVEQRLAAITSQDIERQLPYEARAETQRKRFNLPAWPTTTIGSFPQTTEIRGLRLDFKQGRLDGKNYRTGISEHIKQAIAEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 523          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_YERP3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=metE PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.164e-43
Identity = 91/179 (50.84%), Postives = 114/179 (63.69%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L +AL+   D   A  ++ +A   +R+SS RV N  V++  AA+   D  R     AR + Q+K+ NLP  PTTTIGSFPQT ++R +R +FK  ++   +Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCAELALLTQALNAPNDAKLAELAAYSAPIRARRSSSRVHNAQVEQRLAAITSQDIERQLPYEARAETQRKRFNLPAWPTTTIGSFPQTTEIRGLRLDFKQGRLDGKNYRTGISEHIKQAIAEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 523          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_MYCLE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium leprae GN=metE PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.164e-43
Identity = 90/179 (50.28%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF A+KV EV  LA+AL   +D      +++ AA ASR+S PR+ N  V+    ++  S   R  + + R  +Q  +L+LP LPTTTIGS+PQT  +R+ R   +  +I E +Y+  +K+E+ + +KLQE+L +DVLVHGEPERNDMV+YF EQL GF  T NGWVQSYGSRCV+PP
Sbjct:  349 WLAFGAEKVAEVVVLARALRDGRDAVADEIAASNAAVASRRSDPRLHNGQVRARIDSIVASGTHRG-DAAQRRTSQDARLHLPPLPTTTIGSYPQTSAIRKARAALQDAEIDEAEYISRMKKEVADAIKLQEQLGLDVLVHGEPERNDMVQYFAEQLGGFFATQNGWVQSYGSRCVRPP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BLOPB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metE PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.164e-43
Identity = 91/187 (48.66%), Postives = 117/187 (62.57%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQK----------DEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L  AL+ +            E Y S+N      R  S  + N  V+K    +    + R++  + R+  Q KKLNLP  PTTTIGSFPQT ++R++R  FK  +I+++DY   IK  I  ++  QE+LD+D+LVHGEPERNDMVEYFGE L+GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCYEIKMLCAALNAENTSDATYEDTLSEYYISNNL-----RSYSSTIHNIQVKKRLEHIDEISYSRSSPYTTRVTLQHKKLNLPLFPTTTIGSFPQTEEIRKLRSRFKNNQINKEDYHLNIKNYIKKIIMEQEKLDLDILVHGEPERNDMVEYFGENLNGFIFTQNGWVQSYGSRCVKPP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NEIMF (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=metE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.827e-43
Identity = 95/179 (53.07%), Postives = 118/179 (65.92%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QK  E+  L  AL+  +D      +++ AA  SR +S  +    V K  A L  +  +R +  + R+ AQQ  LNLP LPTT IGSFPQT ++R+ R  FK  ++S  DY   +K+EI  VV+ QE+LD+DVLVHGE ERNDMVEYFGE LSGFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRADVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFKKGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQYGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NEIMB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup B GN=metE PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.827e-43
Identity = 95/179 (53.07%), Postives = 118/179 (65.92%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QK  E+  L  AL+  +D      +++ AA  SR +S  +    V K  A L  +  +R +  + R+ AQQ  LNLP LPTT IGSFPQT ++R+ R  FK  ++S  DY   +K+EI  VV+ QE+LD+DVLVHGE ERNDMVEYFGE LSGFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRADVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARSAFKKGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQYGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NEIMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup A GN=metE PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.827e-43
Identity = 95/179 (53.07%), Postives = 118/179 (65.92%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QK  E+  L  AL+  +D      +++ AA  SR +S  +    V K  A L  +  +R +  + R+ AQQ  LNLP LPTT IGSFPQT ++R+ R  FK  ++S  DY   +K+EI  VV+ QE+LD+DVLVHGE ERNDMVEYFGE LSGFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRADVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFKKGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQYGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SCHPO (Probable 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Schizosaccharomyces pombe GN=SPAC9.09 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 90/179 (50.28%), Postives = 115/179 (64.25%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSG--QKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA +K  E+  L KA +       A   +NAA   +R  SP    EAV++  + +    H R +    R   QQ  L LP  PTTTIGSFPQT ++R  R  F    IS+++Y   I++EI++VVK QEE+ +DVLVHGEPERNDMV+YFGE++ GF FTVNGWVQSYGSRCV+PP
Sbjct:  353 WFAFAVEKCAELAILTKAANDGPASVRAELEANAADCKARAESPITNVEAVRERQSKVTPQMHERKSPFETRYAKQQASLKLPLFPTTTIGSFPQTKEIRVTRNRFAKGLISQEEYDAFIRKEISDVVKFQEEVGLDVLVHGEPERNDMVQYFGERMEGFVFTVNGWVQSYGSRCVRPP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metE PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSS---NAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LA+A++  +  A   +   + A QASR +SPR+   AVQ   AA+   D +R +  + R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ FK  K+S  +Y + +  EI + V +QE L +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  348 WLAFAVQKCQEVAVLAQAVNQPQARAVLKALEQSRAVQASRAASPRIHKPAVQARVAAITTKDSQRRSAFTQRIAKQRAGLDLPLFPTTTIGSFPQTASIRLARQSFKQGKLSVAEYTEAMHSEIRHAVLVQERLGLDVLVHGEAERNDMVEYFAEQLDGYVFTRFGWVQSYGSRCVKP 526          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_YERPA1.657e-4350.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERPS2.164e-4350.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERP32.164e-4350.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCLE2.164e-4350.285-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOPB2.164e-4348.665-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMF2.827e-4353.075-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMB2.827e-4353.075-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMA2.827e-4353.075-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SCHPO3.692e-4350.28Probable 5-methyltetrahydropteroyltriglutamate--ho... [more]
METE_PSEF53.692e-4351.405-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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