CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182036_ssr156 microsatellite CN182036_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2301 contig Csv1_Contig2301:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_DESVM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metE PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKA--LSGQKDE----AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK  EV  +A    L+G+ D     A  + N AA A+R +SP + + AV   A  +      RAT  +AR+ AQ+  L LP LP TTIGSFPQT+D+R  RR+ +  +I+E  Y   ++E I   ++ QE L +DVLVHGEPERNDMVEYFGEQL GF  T NGWVQSYG+RCVKPP
Sbjct:  364 WLAFARQKCAEVRLVADMCDLNGRADAPETAAALARNRAALAARAASPVIHDPAVAVRAGTVTPEMGWRATPYTARIAAQRAALRLPVLPATTIGSFPQTVDIRAQRRKLRTGQITEAQYDAAMREAIATAIREQEALGLDVLVHGEPERNDMVEYFGEQLRGFCITANGWVQSYGTRCVKPP 546          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 92/179 (51.40%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRK--SSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QKV  +  LA+AL+G +     +  A+AQA+R   +SPR+ +  V +  AA+     RR +    R +AQ+ +LNLP LPTTTIGSFPQT ++R+ R  F   +IS+  Y   +++E    V  QE + +DVLVHGE ERNDMV+YFGEQL+GFAFT +GWVQSYGSRCV+PP
Sbjct:  366 WLAFAVQKVEALAVLAQALNGGRASVAAALEASAQAARARATSPRIHDPKVAERLAAVTPDMTRRRSPYDQRREAQRARLNLPPLPTTTIGSFPQTTEVRQARAAFAKGQISDATYEAFLRQETARAVAWQETVGLDVLVHGEFERNDMVQYFGEQLAGFAFTQSGWVQSYGSRCVRPP 544          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_CANAL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Candida albicans GN=MET6 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W +FA QK+ EV  +AK +SG+       +NAA+  +R  S    +  VQ+    +  +   R      RL  Q+ K NLP  PTTTIGSFPQT D+R  R +F   +I+ ++Y   I +EI  VV+ QEE+ +DVLVHGEPERNDMV+YFGEQL+GFAFT NGWVQSYGSR V+PP
Sbjct:  359 WFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFINKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPP 535          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metE PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.692e-43
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK  EV AL  AL+  +    A F + A A A+R++S R+ N  V++  AAL  +D RRA+   AR  AQ+ + +LP LPTTTIGSFPQT ++RR R  F+   +    Y++ ++E++   +  Q    +DVLVHGE ERNDMVEYFGE + GFA T NGWVQSYGSRCVKPP
Sbjct:  346 WLAFAVQKTREVAALRDALAKGRAAVAAEFDAAAVAAAARRTSARIHNPLVKRRVAALTDADARRASAYPARAAAQRARFDLPPLPTTTIGSFPQTPEIRRARAAFRQGVLDHLGYLEAMREQVRIAIDKQLSYGLDVLVHGEAERNDMVEYFGELMWGFAITSNGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NEIG1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metE PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.821e-43
Identity = 95/179 (53.07%), Postives = 118/179 (65.92%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QK  E+  L  AL+  +D      +++ AA  SR +S  +    V K  A L  +  +R +  + R+ AQQ  LNLP LPTT IGSFPQT ++R+ R  FK  ++S  DY   +K+EI  VV+ QE+LD+DVLVHGE ERNDMVEYFGE LSGFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRADVAKRLADLPVNAGQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFKKGELSASDYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQYGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURMS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain SAVP1) GN=metE PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.821e-43
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQK  EV AL  AL   +    A F   A   A+R++S R+ N  V++  AAL  +D RRA+  S R  AQ+ +  LP LPTTTIGSFPQT ++RR R  FK   +    Y++ ++E++   +  Q    +DVLVHGE ERNDMVEYFGE L GFA T NGWVQSYGSRCVKPP
Sbjct:  346 WLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAVVAAARRTSARIHNPLVKRRVAALTDADARRASAYSVRAAAQRARFGLPLLPTTTIGSFPQTPEIRRARAAFKQGVLDHLGYLEAMREQVRIAIDKQLAYGLDVLVHGEAERNDMVEYFGELLWGFAITSNGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei GN=metE PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.821e-43
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQK  EV AL  AL   +    A F   A   A+R++S R+ N  V++  AAL  +D RRA+  S R  AQ+ +  LP LPTTTIGSFPQT ++RR R  FK   +    Y++ ++E++   +  Q    +DVLVHGE ERNDMVEYFGE L GFA T NGWVQSYGSRCVKPP
Sbjct:  346 WLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAVVAAARRTSARIHNPLVKRRVAALTDADARRASAYSVRAAAQRARFGLPLLPTTTIGSFPQTPEIRRARAAFKQGVLDHLGYLEAMREQVRIAIDKQLAYGLDVLVHGEAERNDMVEYFGELLWGFAITSNGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURM9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=metE PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.821e-43
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQK  EV AL  AL   +    A F   A   A+R++S R+ N  V++  AAL  +D RRA+  S R  AQ+ +  LP LPTTTIGSFPQT ++RR R  FK   +    Y++ ++E++   +  Q    +DVLVHGE ERNDMVEYFGE L GFA T NGWVQSYGSRCVKPP
Sbjct:  346 WLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAVVAAARRTSARIHNPLVKRRVAALTDADARRASAYSVRAAAQRARFGLPLLPTTTIGSFPQTPEIRRARAAFKQGVLDHLGYLEAMREQVRIAIDKQLAYGLDVLVHGEAERNDMVEYFGELLWGFAITSNGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURM7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=metE PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.821e-43
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFAAQK  EV AL  AL   +    A F   A   A+R++S R+ N  V++  AAL  +D RRA+  S R  AQ+ +  LP LPTTTIGSFPQT ++RR R  FK   +    Y++ ++E++   +  Q    +DVLVHGE ERNDMVEYFGE L GFA T NGWVQSYGSRCVKPP
Sbjct:  346 WLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAVVAAARRTSARIHNPLVKRRVAALTDADARRASAYSVRAAAQRARFGLPLLPTTTIGSFPQTPEIRRARAAFKQGVLDHLGYLEAMREQVRIAIDKQLAYGLDVLVHGEAERNDMVEYFGELLWGFAITSNGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PELCD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metE PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 91/177 (51.41%), Postives = 111/177 (62.71%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK  EVN +  AL G+       +N  A  +R+ S  V  +AV++  A +    + R ++   R   QQ  L LP LPTTTIGSFPQ   +R  RR FK  +ISE+ Y   ++  I   +  QE L +DVLVHGEPERNDMVEYFGEQL+GF FT NGWVQ YGSRCVKPP
Sbjct:  347 WLAFARQKCQEVNVVRLALDGEDVTEVLQANDTAMENRRKSALVHRDAVRRRMADISPDMYCRRSSFEER-KKQQAWLRLPTLPTTTIGSFPQVAGVRSARRSFKQGRISEEQYRAEMQRYIREAIAQQEALGLDVLVHGEPERNDMVEYFGEQLAGFCFTENGWVQGYGSRCVKPP 522          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_DESVM3.692e-4351.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAUCR3.692e-4351.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CANAL3.692e-4350.285-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURTA3.692e-4351.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIG14.821e-4353.075-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURMS4.821e-4352.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURMA4.821e-4352.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM94.821e-4352.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM74.821e-4352.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PELCD6.297e-4351.415-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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