CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NEIM0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metE PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 95/179 (53.07%), Postives = 117/179 (65.36%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QK  E+  L  AL+  +D      +++ AA  SR +S  +    V K  A L  +  +R +    R+ AQQ  LNLP LPTT IGSFPQT ++R+ R  FK  ++S  DY   +K+EI  VV+ QE+LD+DVLVHGE ERNDMVEYFGE LSGFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRADVAKRLADLPANADQRKSPFVNRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFKKGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQYGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_HAEIG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus influenzae (strain PittGG) GN=metE PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 96/180 (53.33%), Postives = 117/180 (65.00%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQK---DEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+F  QKV E+N L +AL+  +     A  +S AAA A   S      E  ++ A   KG+D R++   + R+  Q   LNLP LPTT IGSFPQT ++R  R  FK  ++S  DY   +K+EI  VV+ QEELD+DVLVHGE ERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  343 WLSFTLQKVEELNVLKQALNNGRASVQAALDASQAAADARATSKEIHRPEVAERLANLPKGADQRKSP-FAERIVKQNAWLNLPLLPTTNIGSFPQTTEIRHARASFKKGELSLADYEAAMKKEIEYVVRRQEELDLDVLVHGEAERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_HAEIE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus influenzae (strain PittEE) GN=metE PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 96/180 (53.33%), Postives = 117/180 (65.00%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQK---DEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+F  QKV E+N L +AL+  +     A  +S AAA A   S      E  ++ A   KG+D R++   + R+  Q   LNLP LPTT IGSFPQT ++R  R  FK  ++S  DY   +K+EI  VV+ QEELD+DVLVHGE ERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  343 WLSFTLQKVEELNVLKQALNNGRASVQAALDASQAAADARATSKEIHRPEVAERLANLPKGADQRKSP-FAERIVKQNAWLNLPLLPTTNIGSFPQTTEIRHARASFKKGELSLADYEAAMKKEIEYVVRRQEELDLDVLVHGEAERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ECOLU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=metE PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 92/177 (51.98%), Postives = 112/177 (63.28%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E++ L  AL+     A    +A  QA R+ S RV N AV+K  AA+   D +RA     R +AQ+ +  LP  PTTTIGSFPQT ++R +R +FK   +  ++Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCHELSLLRDALNSGDTAALAEWSAPIQA-RRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ACTP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=metE PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 96/180 (53.33%), Postives = 117/180 (65.00%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD---EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QKV E+  L +AL+  +D   E    S  AA A R +S  +    V +  A L  +  +R +  + R+  Q K LNLP LPTT IGSFPQT+++R  R  FK  ++S  DY   +K+EI  VV+ QEELD+DVLVHGE ERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  343 WLAFTLQKVAELQVLKQALNAGRDAVTEQLNDSQTAADA-RANSNVIHKAEVAQRLANLPANADKRQSPFAERIKLQNKWLNLPLLPTTNIGSFPQTLEIRHARAAFKKGELSLADYEAAMKKEIEFVVRKQEELDLDVLVHGEGERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_RHOPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris GN=metE PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.224e-43
Identity = 89/179 (49.72%), Postives = 123/179 (68.72%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD--EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+F+ QK+ E++ L++ALSG +   +   S++A A A+R+ SP+V + AV   AAA+  +  +R +  +AR   Q ++L LP  PTTTIGSFPQT  +R+ R       IS+ DY   ++ E    ++ QE++ +DVLVHGE ERNDMV+YFGEQLSGFAFT  GWVQSYGSRCV+PP
Sbjct:  374 WLSFSLQKMGELSTLSRALSGDRAAVQDQLSASAKAAATRRKSPKVHDMAVSSRAAAVTPAMTQRNSGFAARATLQHQRLQLPAFPTTTIGSFPQTAQIRQARAAHAKGAISDADYNTFLRGETARAIQWQEKVGLDVLVHGEFERNDMVQYFGEQLSGFAFTKEGWVQSYGSRCVRPP 552          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ECOLC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=metE PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.224e-43
Identity = 92/177 (51.98%), Postives = 112/177 (63.28%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L  AL+     A    +A  QA R++S RV N AV+K  AA+   D +RA     R +AQ+ +  LP  PTTTIGSFPQT ++R +R +FK   +  ++Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCHELALLRDALNSGDTAALAEWSAPIQA-RRNSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIRQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_CHRVO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromobacterium violaceum GN=metE PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.224e-43
Identity = 92/179 (51.40%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  L + L   +       S +  A+  R++SPR+ + AV +  AAL     RRA+    R + QQ  L LP LPTTTIGSFPQT  +R  R  FK  ++S   Y + +++EI   ++ QE L +DVLVHGE ERNDMVEYFGEQL+GFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFAVQKLNELKTLKRGLEHGRSAIAGELSGSDFAREQRRASPRIHDPAVARRLAALPEGTDRRASPYPIRAERQQAWLKLPPLPTTTIGSFPQTPAIRASRAAFKKGELSAAGYRQAMEKEIELAIRRQEALGLDVLVHGEAERNDMVEYFGEQLAGFAFTAGGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.224e-43
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALS-GQKDEAY-FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+F+ QK+ EV  + +AL  G +  A   ++  AA ASRKSSPR+ N AV +    L   D RR +    R  AQ+ +  LP  PTT+IGSFPQT ++R+ R + +  ++S  DY K ++ EI  VVK QE L IDV VHGEPERNDMVEYFGEQL+GFAFT +GWVQSYGSR VKPP
Sbjct:  371 WLSFSVQKLDEVAIIGRALKEGVESVAQELAAARAAVASRKSSPRIHNPAVAQRLEGLGQDDGRRKSPFPIREAAQRARFKLPAFPTTSIGSFPQTPEIRKARLQNRKGELSNADYQKAMEAEIALVVKEQERLGIDVPVHGEPERNDMVEYFGEQLAGFAFTRHGWVQSYGSRYVKPP 549          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ACIF2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metE PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.224e-43
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALS-GQKDEAY-FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+F+ QK+ EV  + +AL  G +  A   ++  AA ASRKSSPR+ N AV +    L   D RR +    R  AQ+ +  LP  PTT+IGSFPQT ++R+ R + +  ++S  DY K ++ EI  VVK QE L IDV VHGEPERNDMVEYFGEQL+GFAFT +GWVQSYGSR VKPP
Sbjct:  371 WLSFSVQKLDEVAIIGRALKEGVESVAQELAAARAAVASRKSSPRIHNPAVAQRLEGLGQDDGRRKSPFPIREAAQRARFKLPAFPTTSIGSFPQTPEIRKARLQNRKGELSNADYQKAMEAEIALVVKEQERLGIDVPVHGEPERNDMVEYFGEQLAGFAFTRHGWVQSYGSRYVKPP 549          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_NEIM06.297e-4353.075-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAEIG6.297e-4353.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAEIE6.297e-4353.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOLU6.297e-4351.985-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACTP26.297e-4353.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPA8.224e-4349.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOLC8.224e-4351.985-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRVO8.224e-4351.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF58.224e-4353.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF28.224e-4353.635-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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