CN182030

Overview
NameCN182030
Unique NameCN182030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2300 contig Csv1_Contig2300:4..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182030 vs. ExPASy Swiss-Prot
Match: NAT12_ARATH (Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 2.387e-31
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  206 HDRFRHTIRTIQRSLIVSSFINIVLGYSGA*GNLSRFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLEICQQYLKRLHPNAHFILERFALLFCIGVDWTFAAILTAAGAY 562
            ++ F+H +R +Q ++I+ S    VLGYSG    + R  +P+V+ P V  VGL  +  GFPL+G C+EIG+  ++L+ I   YL+++   +H I   +A+   + + W  A +LT  GAY
Sbjct:  269 NNNFKHIMRELQGAIIIGSAFQAVLGYSGLMSLILRLVNPVVVAPTVAAVGLSFYSYGFPLVGKCLEIGVVQILLVIIFALYLRKISVLSHRIFLIYAVPLSLAITWAAAFLLTETGAY 387          

HSP 2 Score: 65.4698 bits (158), Expect = 2.387e-31
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    7 LVPLMGGGHGDNGRVIQSLLFMSGLNTLLQTLFGTRLPKVKGPSAAFTLPVLSIIN 174
            +VP MGG H +   V+ ++LF+SG+ TLL T FG+RLP ++GPS  F  P L+IIN
Sbjct:  204 IVPAMGGSHEEVANVVSTVLFVSGITTLLHTSFGSRLPLIQGPSFVFLAPALAIIN 259          
BLAST of CN182030 vs. ExPASy Swiss-Prot
Match: NAT11_ARATH (Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.096e-29
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  197 HLMHDRFRHTIRTIQRSLIVSSFINIVLGYSGA*GNLSRFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLEICQQYLKRLHPNAHFILERFALLFCIGVDWTFAAILTAAGAYN 565
            +L   +FR T+R +Q ++IV S    +LG+SG    L RF +P+V+ P V  VGL  F  GFP  G CVEI +P+++LL I   YL+ +    H +   +A+     + WT+A  LT  GAY+
Sbjct:  271 NLTEHKFRDTMRELQGAIIVGSLFQCILGFSGLMSLLLRFINPVVVAPTVAAVGLAFFSYGFPQAGTCVEISVPLILLLLIFTLYLRGVSLFGHRLFRIYAVPLSALLIWTYAFFLTVGGAYD 393          

HSP 2 Score: 53.9138 bits (128), Expect = 6.096e-29
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    7 LVPLMGGGHGDNGRVIQSLLFMSGLNTLLQTLFGTRLPKVKGPSAAFTLPVLSIIN 174
            +VP M G   D   VI ++L ++G+ T+L   FGTRLP V+G S  +  PVL +IN
Sbjct:  210 IVPAMDGSDKDTASVISTMLLLTGVTTILHCYFGTRLPLVQGSSFVYLAPVLVVIN 265          
BLAST of CN182030 vs. ExPASy Swiss-Prot
Match: NAT9_ARATH (Putative nucleobase-ascorbate transporter 9 OS=Arabidopsis thaliana GN=NAT9 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.600e-26
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  209 DRFRHTIRTIQRSLIVSSFINIVLGYSGA*GNLSRFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLEICQQYLKRLHPNAHFILERFALLFCIGVDWTFAAILTAAGAYNNVPDQTK 586
            +RF  T+R+IQ +LI++    +++ + G   N+ RF SP+ I P V   GLGL+  GFPL    V+ G PM+     C               +R+ ++ CI V W FA +LT++G Y++ P  T+
Sbjct:  144 ERFVRTMRSIQGALIITGCFQVLVCFLGVWRNIVRFLSPLSIAPLVTFTGLGLYHIGFPL----VKKG-PMIWDGNRC---------------DRYGMMLCIPVVWLFAQLLTSSGVYDHKPQTTQ 249          

HSP 2 Score: 67.3958 bits (163), Expect = 7.600e-26
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    7 LVPLMGGGHGDNGRVIQSLLFMSGLNTLLQTLFGTRLPKVKGPSAAFTLPVLSII 171
            LVPLMGGG  +  +VIQ+LLF+SGL TL Q+ FGTRLP +   S A+ +P+ SII
Sbjct:   77 LVPLMGGGDAEKVKVIQTLLFVSGLTTLFQSFFGTRLPVIASASYAYIIPITSII 131          
BLAST of CN182030 vs. ExPASy Swiss-Prot
Match: S23A2_RAT (Solute carrier family 23 member 2 OS=Rattus norvegicus GN=Slc23a2 PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 4.937e-11
Identity = 38/152 (25.00%), Postives = 64/152 (42.11%), Query Frame = 2
Query:  161 CQSSMITMT-GASHLMHDRFRHTIRTIQRSLIVSSFINIVLGYSGA*GNLSRFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLEICQQYLKRLHPNAHF-----------------ILERFALLFCIGVDWTFAAILTAAGAY 562
            C ++ IT+  G + L+   +   I+ IQ ++I+SS I +V+G  G  G L R+  P+ I P V ++GL  F       G    I +  + L+ +  QY +    N  F                 + + F ++  I V W    I T    +
Sbjct:  186 CNTTEITVANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYAR----NVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVSWLLCFIFTVTDVF 333          

HSP 2 Score: 37.3502 bits (85), Expect = 4.937e-11
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 1
Query:   19 MGGGHGDNGRVIQSLLFMSGLNTLLQTLFGTRLPKVKGPSAAFTLPVLSIIN 174
            +G       ++I ++ F  G+ TLLQT FG RLP  +  + AF  P  +I++
Sbjct:  129 VGDDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILS 180          
BLAST of CN182030 vs. ExPASy Swiss-Prot
Match: S23A2_MOUSE (Solute carrier family 23 member 2 OS=Mus musculus GN=Slc23a2 PE=1 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 4.937e-11
Identity = 36/148 (24.32%), Postives = 63/148 (42.57%), Query Frame = 2
Query:  161 CQSSMITMT-GASHLMHDRFRHTIRTIQRSLIVSSFINIVLGYSGA*GNLSRFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLEICQQYLKRLH-------------PNAHFILERFALLFCIGVDWTFAAILTAAGAY 562
            C ++ IT+  G + L+   +   I+ IQ ++I+SS I +V+G  G  G L R+  P+ I P V ++GL  F       G    I +  + L+ +  QY + +                   + + F ++  I V W    I T    +
Sbjct:  187 CNTTEITVANGTAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKFQLFKMFPIILAILVSWLLCFIFTVTDVF 334          

HSP 2 Score: 37.3502 bits (85), Expect = 4.937e-11
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 1
Query:   19 MGGGHGDNGRVIQSLLFMSGLNTLLQTLFGTRLPKVKGPSAAFTLPVLSIIN 174
            +G       ++I ++ F  G+ TLLQT FG RLP  +  + AF  P  +I++
Sbjct:  130 VGDDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILS 181          
BLAST of CN182030 vs. ExPASy Swiss-Prot
Match: S23A2_HUMAN (Solute carrier family 23 member 2 OS=Homo sapiens GN=SLC23A2 PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.315e-11
Identity = 41/162 (25.31%), Postives = 69/162 (42.59%), Query Frame = 2
Query:  161 CQSSMITMT-GASHLMHDR--FRHTIRTIQRSLIVSSFINIVLGYSGA*GNLSRFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLEICQQYLKRLHPNAHF-----------------ILERFALLFCIGVDWTFAAILTAAGAYNNVPDQTK 586
            C ++ +++  G + L+H    +   IR IQ ++I+SS I +V+G  G  G L ++  P+ I P V ++GL  F       G    I +  + L+ +  QY +    N  F                 + + F ++  I V W    I T    +   PD TK
Sbjct:  187 CNTTDVSVANGTAELLHTEHIWYPRIREIQGAIIMSSLIEVVIGLLGLPGALLKYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYAR----NVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVSWLLCFIFTVTDVF--PPDSTK 342          

HSP 2 Score: 36.965 bits (84), Expect = 8.315e-11
Identity = 17/43 (39.53%), Postives = 27/43 (62.79%), Query Frame = 1
Query:   46 RVIQSLLFMSGLNTLLQTLFGTRLPKVKGPSAAFTLPVLSIIN 174
            ++I ++ F  G+ TLLQT FG RLP  +  + AF  P  +I++
Sbjct:  139 QLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILS 181          
The following BLAST results are available for this feature:
BLAST of CN182030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NAT12_ARATH2.387e-3136.13Nucleobase-ascorbate transporter 12 OS=Arabidopsis... [more]
NAT11_ARATH6.096e-2939.02Nucleobase-ascorbate transporter 11 OS=Arabidopsis... [more]
NAT9_ARATH7.600e-2634.13Putative nucleobase-ascorbate transporter 9 OS=Ara... [more]
S23A2_RAT4.937e-1125.00Solute carrier family 23 member 2 OS=Rattus norveg... [more]
S23A2_MOUSE4.937e-1124.32Solute carrier family 23 member 2 OS=Mus musculus ... [more]
S23A2_HUMAN8.315e-1125.31Solute carrier family 23 member 2 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182030 ID=CN182030; Name=CN182030; organism=Citrus sinensis; type=EST; length=588bp
GGTACACTGGTGCCTCTAATGGGTGGGGGCCATGGAGATAATGGGCGAGT
GATTCAATCTTTGTTGTTCATGTCGGGTCTGAATACGCTGCTTCAAACAC
TTTTTGGGACAAGACTTCCTAAGGTGAAGGGTCCATCCGCTGCTTTCACC
CTGCCAGTATTGTCAATCATCAATGATTACAATGACGGGAGCTTCACATC
TGATGCATGATAGGTTTCGCCACACAATCAGAACTATTCAAAGATCACTT
ATAGTTTCTTCATTTATCAACATCGTGCTTGGATATAGTGGGGCCTGAGG
AAATTTATCAAGATTCTTTAGTCCCATTGTAATCGTACCATTTGTTTGTG
TGGTTGGGCTTGGTCTGTTCATGAGGGGCTTCCCTCTGCTTGGTAACTGC
GTGGAAATCGGCCTGCCTATGTTGGTTCTACTGGAGATTTGTCAACAGTA
TTTGAAGCGCTTACATCCGAACGCCCACTTTATACTTGAGAGGTTTGCTT
TGCTTTTCTGCATTGGAGTTGATTGGACTTTTGCTGCCATCCTCACTGCA
GCTGGTGCTTACAATAATGTTCCAGATCAAACTAAACT
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