CN188850

Overview
NameCN188850
Unique NameCN188850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.591e-45
Identity = 91/167 (54.49%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKMERPA--DEPIPEA 659
            Q +NVLTNF GMD TTDKLRS+V+KW TLIEA VDV+TTD Y LR+FCIGFT +     ++TCYAQ +Q+RQIRRKM + + +  ++ DL+ +V K I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G K+ RP   + P+ E+
Sbjct:   95 QARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEPPVQES 261          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.591e-45
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = -1
Query:  183 GKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEP 656
            GK+VLTNF GM  T+DKL+SLV+KW TLIEA++D KTTD Y LR F IGFTK+ PNQ+K+T YA+ SQ R IR+KM +I+  + ++ DLK +V + I + IG++IEK+  SIYPL +V+IRKVK+LK PK D  KL+E+HG+    S D G  + R   EP
Sbjct:   92 GKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.078e-45
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 659
            QGKN+LTNF G DFT+DK+RSLVRKW +L+EA V VKT D+Y LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I E+IGREIEKA   IYPLQNV IRKVK+LK  KFDLG L+ +HG+  +E+ G K+
Sbjct:   92 QGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 89/145 (61.38%), Postives = 113/145 (77.93%), Query Frame = -1
Query:  225 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS 659
            QG+NVLTNF GM  T DKL S+V+KW TLIEA VDVKTTD Y LR+F IGFTK+  NQVK+TCYAQ +Q++ IR+KM EI+  + +S D+K +V K I + IG++IEK+   IYPL +V I KVK+LK PKFD+GKLME+HG+ S
Sbjct:   92 QGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGS 236          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 92/153 (60.13%), Postives = 112/153 (73.20%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 659
            QGKN+LTNF G+D TTDK RS+VRKW TLIEA V VKT D Y LR+F I FT+R PNQVK+ CYAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:   92 QGKNLLTNFHGLDLTTDKYRSMVRKWQTLIEANVTVKTADEYVLRVFAIAFTRRQPNQVKKACYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGEASGEEKGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 90/172 (52.33%), Postives = 123/172 (71.51%), Query Frame = -1
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------DVGVKMERPA--DEPIPEA 659
            QG+NVLTNF GMD TTDKLRS+V+KW +LIEA  DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  DLK +V K + + I ++IEKA+  IYPL +V+IRKVK+LK P+F+L KL+E+HGD  +       + G K+++P   + P+ EA
Sbjct:   95 QGRNVLTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 92/153 (60.13%), Postives = 114/153 (74.51%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 659
            QGKN+LTNF G+DFTTDKLRS+VRKW TLIEA V VKT D+Y LR+F I FT+R  NQ+K+T YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:   92 QGKNLLTNFHGLDFTTDKLRSMVRKWQTLIEANVTVKTADDYVLRVFAIAFTRRQSNQIKKTSYAQSSHIRAIRKVISEILTREVQNATLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGESSGEEKGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.031e-44
Identity = 92/154 (59.74%), Postives = 115/154 (74.68%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKM 659
            QG+  LT F GMD T DKL SL+RK+ TLIEA+ +VKT+D Y LR+FCI FT+R+ +QVK TCYAQ SQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G K+
Sbjct:   92 QGRTCLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.759e-44
Identity = 92/159 (57.86%), Postives = 115/159 (72.33%), Query Frame = -1
Query:  186 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 659
            QGKN+LTNF GMDFT DKLRS+VRKW TLIEA V VKT+D Y +R+F I FT++  NQVKRT YAQ+S IR IR+ + +I+  + ++  L     K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+    DE
Sbjct:   92 QGKNLLTNFHGMDFTADKLRSMVRKWQTLIEANVTVKTSDEYIIRVFAIAFTRKQSNQVKRTAYAQSSHIRAIRKVISDILTREVSNSTLAQFTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSAEEKGKKVSGFKDE 250          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAST (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae GN=RPS1B PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.759e-44
Identity = 92/159 (57.86%), Postives = 116/159 (72.96%), Query Frame = -1
Query:  186 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 659
            QGKN+LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   92 QGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          
The following BLAST results are available for this feature:
BLAST of CN188850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS3A_TRIIF1.591e-4554.4940S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_TRIAD1.591e-4555.2840S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_PICPG2.078e-4560.1340S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_APLCA2.714e-4561.3840S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_LACTC3.545e-4560.1340S ribosomal protein S1 OS=Lachancea thermotolera... [more]
RS3A_BIPLU3.545e-4552.3340S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3A_ASHGO4.630e-4560.1340S ribosomal protein S1 OS=Ashbya gossypii GN=RPS... [more]
RS3A_CRYHO1.031e-4459.7440S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_CANGA1.759e-4457.8640S ribosomal protein S1 OS=Candida glabrata GN=RP... [more]
RS3A2_YEAST1.759e-4457.8640S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188850 ID=CN188850; Name=CN188850; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTGCCATCTCAAACACCTTCTAGAATAAAATATGT
AAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTA
CTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCAA
GCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCT
TTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCA
ACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATG
AAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCT
TCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACACG
ATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTA
ATCTGGCTGGCCTGTGCGTAACAAGTCCTCTTAACCTGATTTGGAAGTCT
CTTGGTGAATCCAATGCAAAACATCCTCAATGTGTAGTTATCAGTGGTCT
TGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGAC
CTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACATT
CTTCCCTTG
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