CN188850

Overview
NameCN188850
Unique NameCN188850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.449e-54
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.449e-54
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.199e-54
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.199e-54
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.199e-54
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.457e-54
Identity = 108/164 (65.85%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.457e-54
Identity = 108/164 (65.85%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.216e-53
Identity = 107/161 (66.46%), Postives = 127/161 (78.88%), Query Frame = -1 
Query:  180 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPI 659
            QGKN LTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F IGFTKR PNQ+K+T YA +SQIR IR+KM EIM   A+SC L  L +K I E+IGREIEK+T  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G K+ER   E +
Sbjct:   91 QGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFAIGFTKRRPNQIKKTTYAASSQIRAIRKKMVEIMTRDASSCTLAQLTQKLIPEVIGREIEKSTQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSADDSGQKVEREFKETV 251
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.216e-53
Identity = 108/164 (65.85%), Postives = 127/164 (77.44%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFT+DKLRSLVRKW TLIEA + VKTTD+Y LR+F I FTKR PNQVK+T YA +SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S++ G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFAIAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVEREFKETVLES 255
[Close]
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.708e-53
Identity = 106/164 (64.63%), Postives = 129/164 (78.66%), Query Frame = -1 
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 659
            QGKN LTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I E+IGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255
The following BLAST results are available for this feature:
BLAST of CN188850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS3A_ASPOR2.449e-5466.4640S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]
RS3A_ASPFN2.449e-5466.4640S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_NEOFI3.199e-5466.4640S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_ASPFU3.199e-5466.4640S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFC3.199e-5466.4640S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPTN5.457e-5465.8540S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPNC5.457e-5465.8540S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_PHANO1.216e-5366.4640S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]
RS3A_NEUCR1.216e-5365.8540S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_EMENI2.708e-5364.6340S ribosomal protein S1 OS=Emericella nidulans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188850 ID=CN188850; Name=CN188850; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTGCCATCTCAAACACCTTCTAGAATAAAATATGT
AAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTA
CTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCAA
GCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCT
TTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCA
ACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATG
AAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCT
TCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACACG
ATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTA
ATCTGGCTGGCCTGTGCGTAACAAGTCCTCTTAACCTGATTTGGAAGTCT
CTTGGTGAATCCAATGCAAAACATCCTCAATGTGTAGTTATCAGTGGTCT
TGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGAC
CTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACATT
CTTCCCTTG
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