CN188850

Overview
NameCN188850
Unique NameCN188850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.968e-48
Identity = 93/153 (60.78%), Postives = 122/153 (79.74%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 659
            QGKN+LTNF G+DFTTDKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   92 QGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.302e-47
Identity = 91/161 (56.52%), Postives = 121/161 (75.16%), Query Frame = -1
Query:  198 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 659
            QGKN L NF GMD T DK+ S+V+KW T+IEA++DVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   92 QGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 252          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.900e-47
Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = -1
Query:  171 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 659
            QGKN LTNF GMDFT+DKLRSLVRKW +LIEA V VKTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A++  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFD+G L+ +HG+ S +D G K+ER   E + E+
Sbjct:   92 QGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.900e-47
Identity = 91/152 (59.87%), Postives = 118/152 (77.63%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 659
            QG  +LTNF GMDFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EI+  + ++  L  L  K I E+I REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE+ G K+
Sbjct:   79 QGNKILTNFHGMDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.947e-47
Identity = 93/153 (60.78%), Postives = 122/153 (79.74%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 659
            QGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   92 QGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 91/149 (61.07%), Postives = 116/149 (77.85%), Query Frame = -1
Query:  213 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 659
            QG+N LTNF G   T DKL SL+RK ++LIEA+ DVKTTD YTLRMFCIG+TKR P Q+K TCY ++S+ R +RRKM E+M  +A++  ++ +V+K I E IG+EIEKA  S++PLQNV IRK+K+LK PKFDL KLMEVH D SE+ G
Sbjct:   92 QGRNCLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKRRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 94/153 (61.44%), Postives = 120/153 (78.43%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 659
            QGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   92 QGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 94/153 (61.44%), Postives = 120/153 (78.43%), Query Frame = -1
Query:  204 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 659
            QGKN+LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   92 QGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.438e-47
Identity = 93/167 (55.69%), Postives = 123/167 (73.65%), Query Frame = -1
Query:  174 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPE 659
            QG+NVLTNF GMD TTDKLRS+V+KW TLIEA VDVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +++RP   + P+ E
Sbjct:   95 QGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQE 261          
BLAST of CN188850 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.102e-46
Identity = 97/171 (56.73%), Postives = 120/171 (70.18%), Query Frame = -1
Query:  141 KNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA*IK 653
            K+  T+F G+  T DKL SL+RK +TLIE Y DVKT DNY LRMFCI FTK+ PNQ K TCYAQ SQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  ++     P  +  T ++ A +K
Sbjct:   94 KDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNVK---SLPESKEATNILSAELK 261          
The following BLAST results are available for this feature:
BLAST of CN188850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS3A1_DEBHA9.968e-4860.7840S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_OPHHA1.302e-4756.5240S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3A_UNCRE2.900e-4761.5940S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]
RS3A_LODEL2.900e-4759.8740S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A2_PICST4.947e-4760.7840S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A_BABBO6.461e-4761.0740S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]
RS3A2_CLAL46.461e-4761.4440S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL46.461e-4761.4440S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_PERAM8.438e-4755.6940S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_PLAVI1.102e-4656.7340S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188850 ID=CN188850; Name=CN188850; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTGCCATCTCAAACACCTTCTAGAATAAAATATGT
AAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTA
CTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCAA
GCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCT
TTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCA
ACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATG
AAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCT
TCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACACG
ATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTA
ATCTGGCTGGCCTGTGCGTAACAAGTCCTCTTAACCTGATTTGGAAGTCT
CTTGGTGAATCCAATGCAAAACATCCTCAATGTGTAGTTATCAGTGGTCT
TGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGAC
CTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACATT
CTTCCCTTG
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