CN182027

Overview
NameCN182027
Unique NameCN182027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_ORENI (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 106/170 (62.35%), Postives = 123/170 (72.35%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD+G VI+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ ++                      CTSL WSADG TLF+GYTD +IRVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDSGDVINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_MOUSE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_MACFA (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_HUMAN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 106/170 (62.35%), Postives = 121/170 (71.18%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G  I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ D+                      CTSL WSADG TLF+GYTD +IRVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDTINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQDIITTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_CHICK (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_BOVIN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_HYDAT (Guanine nucleotide-binding protein subunit beta-like protein OS=Hydra attenuata GN=RACK1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.869e-56
Identity = 106/172 (61.63%), Postives = 120/172 (69.77%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 520
            VRFSPNT  P IVS  WD+ VKVWNL+NCKL+    GHTGY+N V VSPDGSLCASGGKDG  +LWDL EGK LY+LD G VI+ALCFSPNRYWLCAAT   IKIWDLE KS+V++LK  +                      C SL WSADG TLF+GYTD +IRVW + R
Sbjct:  154 VRFSPNTQNPIIVSCGWDKMVKVWNLTNCKLKTNHFGHTGYLNAVTVSPDGSLCASGGKDGNAMLWDLNEGKHLYTLDGGNVINALCFSPNRYWLCAATGPMIKIWDLEMKSVVDELKPGVIGISTKSRAAD-----------CISLAWSADGQTLFAGYTDNLIRVWQVTR 314          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.123e-54
Identity = 105/171 (61.40%), Postives = 120/171 (70.18%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPNT  P IVS+ WDR VKVWNL+NCKL+    GHTGYVNTV VSPDGSLCASGGKD   +LWDL EGK LY+LD AG  I+ALCFSPNRYWLC A+  SIKIWDLE K +V++LK ++                      C SL WSADG TLF+GYTD +IRVW +
Sbjct:  154 VRFSPNTQNPIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASGPSIKIWDLEGKVVVDELKPEVMGTTSKAPT-------------CLSLAWSADGQTLFAGYTDKLIRVWQV 311          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_NEUCR (Guanine nucleotide-binding protein subunit beta-like protein OS=Neurospora crassa GN=cpc-2 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.551e-52
Identity = 99/170 (58.24%), Postives = 114/170 (67.06%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN   P IVS+ WD+ VKVW LS+CKL+    GHTGY+N V +SPDGSLCASGGKDG  +LWDL E K LYSL+A   IHAL FSPNRYWLCAAT  SI I+DLE KS V++LK +                       C SL WSADG TLF+GYTD +IR WG+
Sbjct:  154 VRFSPNPQNPVIVSSGWDKLVKVWELSSCKLQTDHIGHTGYINAVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATSSSIIIFDLEKKSKVDELKPEFQNIGKKSREPE-----------CVSLAWSADGQTLFAGYTDNIIRAWGV 312          
The following BLAST results are available for this feature:
BLAST of CN182027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GBLP_ORENI4.571e-5762.35Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MOUSE4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MACFA4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HUMAN4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_DANRE4.571e-5762.35Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_CHICK4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_BOVIN4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HYDAT3.869e-5661.63Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BIOGL2.123e-5461.40Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_NEUCR7.551e-5258.24Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182027 ID=CN182027; Name=CN182027; organism=Citrus sinensis; type=EST; length=702bp
GAGGGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCT
CGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGG
GCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCC
GGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGT
GGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTC
ATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGAC
TGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGG
ATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACC
GCCACCACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTG
GAGTGCTGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCA
GAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAACT
GCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTC
AGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTTTTTAAGGATATTT
TGTTCTCTTTATTTGGATCTTATATGGCTTTGAAGCCTCTGCTGTTTTGG
TT
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