CN182027

Overview
NameCN182027
Unique NameCN182027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.682e-51
Identity = 98/170 (57.65%), Postives = 115/170 (67.65%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSP+   P IVSA WD+ VKVWNL NC+L+    GHTGYVNTV VSPDGSLCASGGKDG  +LWDL EGK LY+L    VI+A+ FSPNRYWLCAA   SIKIWDLE K  +E+LK ++                   +  C SL WS DG TLF+GYTD +IRV+ +
Sbjct:  160 VRFSPSNRDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGNDVINAMSFSPNRYWLCAAVGSSIKIWDLEDKKEIEELKPEI----------ASSGSSRGSSPQCISLAWSQDGQTLFAGYTDNIIRVYQV 319          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.144e-50
Identity = 96/170 (56.47%), Postives = 111/170 (65.29%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN   P IVS  WDRTVKVWNL+NCKL+    GH GY+NTV VSPDGSLC SGGKD   LLWDL +GK LY+L+   +I+ALCFSPNRYWLC A   SIKIWDL  K  VE+L+ ++                      C SL WS DG TLF+GY+D  IRVW +
Sbjct:  155 VRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQP-----------QCLSLAWSTDGQTLFAGYSDNTIRVWQV 313          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 2.128e-46
Identity = 93/170 (54.71%), Postives = 112/170 (65.88%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN    T VSA WD+ VKVW+L    LR +  GHTGYV+ V +SPDGSLCASGG+DG ++LWDL E   LYSL+A A I+AL FSPNRYWLCAAT  SI+I+DLE++  V++L VD                       C SL WS DG TLFSG+TD +IRVW +
Sbjct:  154 VRFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPE-----------CISLTWSPDGQTLFSGWTDNLIRVWQV 312          

HSP 2 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 45/163 (27.61%), Postives = 75/163 (46.01%), Query Frame = 2
Query:   41 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC--FSP---NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            +SASWD+T+++W+L   +      GHT  V +V++SPD     SG +D  I +W++    +    D G      C  FSP   N  ++ A  ++++K+WDLE+ S+                             Y +++  S DGS   SG  DG + +W +
Sbjct:   79 LSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSL--------------------RTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDL 221          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.073e-45
Identity = 90/170 (52.94%), Postives = 111/170 (65.29%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSP+   P IVS  WD  VKVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C S+ WSADGSTL+SGYTD VIRVWG+
Sbjct:  158 VRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------CVSIAWSADGSTLYSGYTDNVIRVWGV 314          

HSP 2 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   41 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA---VIHALCFSPN---RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VSASWD ++++WNL N + +    GHT  V +VA SPD     SGG+D  + +W++ +G+ +++L  GA    +  + FSP+      +    +  +K+WDL +  +V DLK                        Y TS+  S DGS   S   DGV R+W +
Sbjct:   83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK--------------------GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.073e-45
Identity = 90/170 (52.94%), Postives = 111/170 (65.29%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSP+   P IVS  WD  VKVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C S+ WSADGSTL+SGYTD VIRVWG+
Sbjct:  158 VRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------CVSIAWSADGSTLYSGYTDNVIRVWGV 314          

HSP 2 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   41 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA---VIHALCFSPN---RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VSASWD ++++WNL N + +    GHT  V +VA SPD     SGG+D  + +W++ +G+ +++L  GA    +  + FSP+      +    +  +K+WDL +  +V DLK                        Y TS+  S DGS   S   DGV R+W +
Sbjct:   83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK--------------------GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.686e-43
Identity = 81/168 (48.21%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   11 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                       C S+ WSADG+TL+SG+ D +IRVW I
Sbjct:  158 FSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.686e-43
Identity = 81/168 (48.21%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   11 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                       C S+ WSADG+TL+SG+ D +IRVW I
Sbjct:  158 FSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 81/168 (48.21%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   11 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                       C S+ WSADG+TL+SG+ D +IRVW I
Sbjct:  158 FSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIGFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_DICDI (Guanine nucleotide-binding protein subunit beta-like protein OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 86/168 (51.19%), Postives = 109/168 (64.88%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            +RFSPNT  PTIVS SWD  VK+W++ + K   TL  HTGYVNTV +SPDGSLCASGGKD    LW+L+ GK LY L+A   I+AL FSPN+YWL AAT+  I IWDL +K ++ ++  ++                      C SL WSADGS L++GY DG+IRV+
Sbjct:  162 IRFSPNT--PTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIWDLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPA---CLSLAWSADGSVLYAGYNDGLIRVY 324          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 72/160 (45.00%), Postives = 97/160 (60.62%), Query Frame = 2
Query:   35 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            TI+SA  D+ VK WNL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      +  SL WSADG TLF+GYTD VIRVW +
Sbjct:  168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HAVSLAWSADGQTLFAGYTDNVIRVWQV 315          
The following BLAST results are available for this feature:
BLAST of CN182027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GBLP_CAEEL1.682e-5157.65Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_DROME4.144e-5056.47Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SCHPO2.128e-4654.71Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBR3.073e-4552.94Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBB3.073e-4552.94Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIIN1.686e-4348.21Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH1.686e-4348.21Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIMA3.756e-4348.21Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DICDI1.093e-4251.19Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_YEAST4.163e-3445.00Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182027 ID=CN182027; Name=CN182027; organism=Citrus sinensis; type=EST; length=702bp
GAGGGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCT
CGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGG
GCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCC
GGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGT
GGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTC
ATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGAC
TGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGG
ATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACC
GCCACCACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTG
GAGTGCTGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCA
GAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAACT
GCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTC
AGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTTTTTAAGGATATTT
TGTTCTCTTTATTTGGATCTTATATGGCTTTGAAGCCTCTGCTGTTTTGG
TT
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