CN182027

Overview
NameCN182027
Unique NameCN182027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 46/169 (27.22%), Postives = 78/169 (46.15%), Query Frame = 2
Query:   20 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGST-LFSGYTDGVIRVWGI 514
            N     +VS S+D +V++W++       TL  H+  V+ V+ + DGSL ASG  DG++ +WD A G+ + +L  D    +  + FSPN +Y L +  + ++K+WD      ++                         + YC   N+S  G   + SG  D  I +W +
Sbjct:  180 NPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQ------------------YTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNL 330          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 47/169 (27.81%), Postives = 78/169 (46.15%), Query Frame = 2
Query:   20 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGST-LFSGYTDGVIRVWGI 514
            N     +VS S+D +V++W++       TL  H+  V+ V+ + DGSL  SG  DG++ +WD A G+ + +L  D    +  + FSPN +Y L +  + ++K+WD      ++  +                      N YC   N+S  G   + SG  D  I VW +
Sbjct:  172 NPQSSLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCVKTLVDDENPPVAFVKFSPNGKYILSSNLDNTLKLWDFGKGKTLKQYQ------------------GHENNKYCIFANFSVTGGKWIISGSEDCKIYVWNL 322          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 2
Query:   44 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                      NI  TSL +S D   + S   D  +RVW I
Sbjct:  401 SGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 51/158 (32.28%), Postives = 72/158 (45.57%), Query Frame = 2
Query:   38 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            +VS S D TVK+W+ S  K R TL GHTG VN+V +  D  L  SG  D  I +W L     L++  A    + +L  + +R + C + + +IK WD+E K  V  L   +                            +AD   L SG  DGV++VW
Sbjct:  366 LVSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGVWEI----------------------AADHLRLISGAHDGVVKVW 499          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   35 TIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            TIV+ S D  VKVW  S+ KL    TL GH   V +V +S +G++ AS   D  I LWDL  GK++ S+DAG V    + FSP+  ++   +    + I+ +ES      L                         +  S+ +S DG  L SG  DG+I ++ I
Sbjct:   34 TIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 44/170 (25.88%), Postives = 82/170 (48.24%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D  L  SG  D  + +W+L+ GK L +L   +     C F+P    + + + ++S++IWD+ +   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   78 VKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 225          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 2
Query:   38 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWD 325
            IVS S+D +VK+W +   K   TL+ H+  ++ V  + +GSL  SG  DG+  +WD A G+ L +L  +    +  + FSPN +Y L A  + ++K+WD
Sbjct:  138 IVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 236          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 51/173 (29.48%), Postives = 77/173 (44.51%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            V  SP +L     S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                          TSL +S D   + S   D  +RVW I
Sbjct:  390 VDISPFSLY--FASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELR--------------------GHTDSITSLAFSPDSGLIASASMDNSVRVWDI 539          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: EIF3I_PICST (Eukaryotic translation initiation factor 3 subunit I OS=Pichia stipitis GN=TIF34 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 42/154 (27.27%), Postives = 68/154 (44.16%), Query Frame = 2
Query:   38 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVI 499
            + S + D    +W  SN +   TL GH G + ++ V PD  LCA+GG D  I LW +  GK +++ ++ + +  + FSP+   L A  +Q   +       +V ++  D                        T   WSA+G  + SG+ DG I
Sbjct:   25 LFSVAKDNAASIWYSSNGERLGTLEGHQGVIWSIDVDPDTHLCATGGGDLAIKLWKVETGKCVFTWESPSPVRRVAFSPDGSRLLAIADQ---VMGHIGTIVVYEINHDDESLTNQSTEPSLVIETPQDGAKATVAGWSANGEFIISGHDDGYI 175          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 47/159 (29.56%), Postives = 71/159 (44.65%), Query Frame = 2
Query:   41 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            VS   DR  ++W   + +     AGH   VN     P+ +  A+G  D  + LWD+  G   R+++   G  IH+L FSPN R+    AT+  + +WD+    +V +LK                      +  C SL +S DG  L SG  D  +R+W
Sbjct:  602 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 739          
The following BLAST results are available for this feature:
BLAST of CN182027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
TG125_CAEEL5.849e-1227.22WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
TG125_CAEBR7.639e-1227.81WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
TAF5L_HUMAN1.303e-1130.63TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
POF1_SCHPO1.303e-1132.28F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
WDR61_DANRE2.903e-1132.32WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
WDS_DROME4.952e-1125.88Protein will die slowly OS=Drosophila melanogaster... [more]
WDR5B_MOUSE4.952e-1136.36WD repeat-containing protein 5B OS=Mus musculus GN... [more]
TAF5L_MOUSE4.952e-1129.48TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
EIF3I_PICST4.952e-1127.27Eukaryotic translation initiation factor 3 subunit... [more]
TAF5_MOUSE6.467e-1129.56Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182027 ID=CN182027; Name=CN182027; organism=Citrus sinensis; type=EST; length=702bp
GAGGGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCT
CGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGG
GCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCC
GGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGT
GGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTC
ATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGAC
TGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGG
ATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACC
GCCACCACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTG
GAGTGCTGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCA
GAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAACT
GCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTC
AGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTTTTTAAGGATATTT
TGTTCTCTTTATTTGGATCTTATATGGCTTTGAAGCCTCTGCTGTTTTGG
TT
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