CN182027

Overview
NameCN182027
Unique NameCN182027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 47/159 (29.56%), Postives = 71/159 (44.65%), Query Frame = 2
Query:   41 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            VS   DR  ++W   + +     AGH   VN     P+ +  A+G  D  + LWD+  G   R+++   G  IH+L FSPN R+    AT+  + +WD+    +V +LK                      +  C SL +S DG  L SG  D  +R+W
Sbjct:  601 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 738          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 43/170 (25.29%), Postives = 83/170 (48.82%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   51 VKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 43/170 (25.29%), Postives = 83/170 (48.82%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   51 VKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 43/170 (25.29%), Postives = 83/170 (48.82%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   51 VKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 43/170 (25.29%), Postives = 83/170 (48.82%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   51 VKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 43/170 (25.29%), Postives = 83/170 (48.82%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVW 508
            V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   51 VKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 2
Query:   38 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWD 325
            IVS S+D +VK+W +   K   TL+ H+  ++ V    +GSL  SG  DG+  +WD A G+ L +L  +    +  + FSPN +Y L A  + ++K+WD
Sbjct:  138 IVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWD 236          
The following BLAST results are available for this feature:
BLAST of CN182027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
TAF5_HUMAN6.467e-1129.56Transcription initiation factor TFIID subunit 5 OS... [more]
WDR5_XENTR8.446e-1125.29WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT8.446e-1125.29WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE8.446e-1125.29WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN8.446e-1125.29WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN8.446e-1125.29WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WDR5B_RAT8.446e-1136.36WD repeat-containing protein 5B OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182027 ID=CN182027; Name=CN182027; organism=Citrus sinensis; type=EST; length=702bp
GAGGGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCT
CGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGG
GCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCC
GGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGT
GGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTC
ATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGAC
TGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGG
ATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACC
GCCACCACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTG
GAGTGCTGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCA
GAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAACT
GCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTC
AGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTTTTTAAGGATATTT
TGTTCTCTTTATTTGGATCTTATATGGCTTTGAAGCCTCTGCTGTTTTGG
TT
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