CN182026

Overview
NameCN182026
Unique NameCN182026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182026_ssr325 microsatellite CN182026_ssr325:325..336. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:548..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_MOUSE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_MACFA (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_HUMAN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_CHICK (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_BOVIN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 100/166 (60.24%), Postives = 117/166 (70.48%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN+  P IVS  WD+  KVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_HYDAT (Guanine nucleotide-binding protein subunit beta-like protein OS=Hydra attenuata GN=RACK1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.454e-53
Identity = 101/168 (60.12%), Postives = 115/168 (68.45%), Query Frame = -2 
Query:  218 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 721
            PNT  P IVS  WD+  KVWNL+NCKL+    GHTGY+N V VSPDGSLCASGGKDG  +LWDL EGK LY+LD G VI+ALCFSPNRYWLCAAT   IKIWDLE KS+V++LK  +                      C SL WSADG TLF+GYTD +IRVW + R
Sbjct:  158 PNTQNPIIVSCGWDKMVKVWNLTNCKLKTNHFGHTGYLNAVTVSPDGSLCASGGKDGNAMLWDLNEGKHLYTLDGGNVINALCFSPNRYWLCAATGPMIKIWDLEMKSVVDELKPGVIGISTKSRAAD-----------CISLAWSADGQTLFAGYTDNLIRVWQVTR 314
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.759e-51
Identity = 100/167 (59.88%), Postives = 115/167 (68.86%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PNT  P IVS+ WDR  KVWNL+NCKL+    GHTGYVNTV VSPDGSLCASGGKD   +LWDL EGK LY+LD AG  I+ALCFSPNRYWLC A+  SIKIWDLE K +V++LK ++                      C SL WSADG TLF+GYTD +IRVW +
Sbjct:  158 PNTQNPIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASGPSIKIWDLEGKVVVDELKPEVMGTTSKAPT-------------CLSLAWSADGQTLFAGYTDKLIRVWQV 311
[Close]
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_NEUCR (Guanine nucleotide-binding protein subunit beta-like protein OS=Neurospora crassa GN=cpc-2 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.256e-49
Identity = 94/166 (56.63%), Postives = 109/166 (65.66%), Query Frame = -2 
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN   P IVS+ WD+  KVW LS+CKL+    GHTGY+N V +SPDGSLCASGGKDG  +LWDL E K LYSL+A   IHAL FSPNRYWLCAAT  SI I+DLE KS V++LK +                       C SL WSADG TLF+GYTD +IR WG+
Sbjct:  158 PNPQNPVIVSSGWDKLVKVWELSSCKLQTDHIGHTGYINAVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATSSSIIIFDLEKKSKVDELKPEFQNIGKKSREPE-----------CVSLAWSADGQTLFAGYTDNIIRAWGV 312
The following BLAST results are available for this feature:
BLAST of CN182026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GBLP_RAT3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MOUSE3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MACFA3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HUMAN3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_CHICK3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_BOVIN3.787e-5460.24Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HYDAT2.454e-5360.12Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BIOGL1.759e-5159.88Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_NEUCR6.256e-4956.63Guanine nucleotide-binding protein subunit beta-li... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182026 ID=CN182026; Name=CN182026; organism=Citrus sinensis; type=EST; length=722bp
GCCCCTTTATGTAACATCTAAAAAATAATAAGCCAAACCAAAACAGCAGA
GGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAATATCCTTAAA
AACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAAACTGCCTACA
AAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGTTTGCAATTAC
TCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGATCACACCATC
TGTATAACCACTGAACAAGGTGCTTCCATCAGCACTCCAGTTCAAGCTTG
TGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGTGGTGGCCTCA
GATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCTCGACAATGCT
CTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTCGCCGCACACA
ACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGACAGCACCAGCG
TCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACAACAGAATCAC
ACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGCGACACTGCGA
CGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCTAAGCTTGCAG
TTGCTCAAATTCCACACTTTGAACGAACGGTCCCACGAGGCGGAAACGAT
AGTGGGCTGAAGCGTGTTGGGG
back to top