CN182026

Overview
NameCN182026
Unique NameCN182026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.820e-48
Identity = 93/166 (56.02%), Postives = 110/166 (66.27%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            P+   P IVSA WD+  KVWNL NC+L+    GHTGYVNTV VSPDGSLCASGGKDG  +LWDL EGK LY+L    VI+A+ FSPNRYWLCAA   SIKIWDLE K  +E+LK ++                   +  C SL WS DG TLF+GYTD +IRV+ +
Sbjct:  164 PSNRDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGNDVINAMSFSPNRYWLCAAVGSSIKIWDLEDKKEIEELKPEI----------ASSGSSRGSSPQCISLAWSQDGQTLFAGYTDNIIRVYQV 319          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.648e-47
Identity = 90/166 (54.22%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN   P IVS  WDR+ KVWNL+NCKL+    GH GY+NTV VSPDGSLC SGGKD   LLWDL +GK LY+L+   +I+ALCFSPNRYWLC A   SIKIWDL  K  VE+L+ ++                      C SL WS DG TLF+GY+D  IRVW +
Sbjct:  159 PNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQP-----------QCLSLAWSTDGQTLFAGYSDNTIRVWQV 313          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 88/166 (53.01%), Postives = 108/166 (65.06%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            PN    T VSA WD++ KVW+L    LR +  GHTGYV+ V +SPDGSLCASGG+DG ++LWDL E   LYSL+A A I+AL FSPNRYWLCAAT  SI+I+DLE++  V++L VD                       C SL WS DG TLFSG+TD +IRVW +
Sbjct:  158 PNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPE-----------CISLTWSPDGQTLFSGWTDNLIRVWQV 312          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 85/166 (51.20%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            P+   P IVS  WD   KVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C S+ WSADGSTL+SGYTD VIRVWG+
Sbjct:  162 PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------CVSIAWSADGSTLYSGYTDNVIRVWGV 314          

HSP 2 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = -2
Query:  224 VSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA---VIHALCFSPN---RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 697
            VSASWD S ++WNL N + +    GHT  V +VA SPD     SGG+D  + +W++ +G+ +++L  GA    +  + FSP+      +    +  +K+WDL +  +V DLK                        Y TS+  S DGS   S   DGV R+W +
Sbjct:   83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK--------------------GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 85/166 (51.20%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            P+   P IVS  WD   KVW+L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+ +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C S+ WSADGSTL+SGYTD VIRVWG+
Sbjct:  162 PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------CVSIAWSADGSTLYSGYTDNVIRVWGV 314          

HSP 2 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = -2
Query:  224 VSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA---VIHALCFSPN---RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 697
            VSASWD S ++WNL N + +    GHT  V +VA SPD     SGG+D  + +W++ +G+ +++L  GA    +  + FSP+      +    +  +K+WDL +  +V DLK                        Y TS+  S DGS   S   DGV R+W +
Sbjct:   83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK--------------------GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.650e-41
Identity = 79/166 (47.59%), Postives = 110/166 (66.27%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            P+   P +VS SWD + KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                   K   C S+ WSADG+TL+SG+ D +IRVW I
Sbjct:  160 PSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.650e-41
Identity = 79/166 (47.59%), Postives = 110/166 (66.27%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            P+   P +VS SWD + KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                   K   C S+ WSADG+TL+SG+ D +IRVW I
Sbjct:  160 PSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.676e-41
Identity = 79/166 (47.59%), Postives = 110/166 (66.27%), Query Frame = -2
Query:  224 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 721
            P+   P +VS SWD + KVWN++  K   TL GH+ YV+TV VSPDGSLCASGGKDG  LLWDL+ G++L+ ++  + I+ + FSPNR+W+C ATE+S+ ++DLESK+++ +L  D                   K   C S+ WSADG+TL+SG+ D +IRVW I
Sbjct:  160 PSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIGFSPNRFWMCVATERSLSVYDLESKAVIAELTPD-----------------GAKPSECISIAWSADGNTLYSGHKDNLIRVWSI 308          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_DICDI (Guanine nucleotide-binding protein subunit beta-like protein OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 82/164 (50.00%), Postives = 104/164 (63.41%), Query Frame = -2
Query:  230 PNTLQPTIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVW 721
            PNT  PTIVS SWD   K+W++ + K   TL  HTGYVNTV +SPDGSLCASGGKD    LW+L+ GK LY L+A   I+AL FSPN+YWL AAT+  I IWDL +K ++ ++  ++                      C SL WSADGS L++GY DG+IRV+
Sbjct:  166 PNT--PTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIWDLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPA---CLSLAWSADGSVLYAGYNDGLIRVY 324          
BLAST of CN182026 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 71/160 (44.38%), Postives = 96/160 (60.00%), Query Frame = -2
Query:  224 TIVSASWDRSFKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 703
            TI+SA  D+  K WNL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      +  SL WSADG TLF+GYTD VIRVW +
Sbjct:  168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HAVSLAWSADGQTLFAGYTDNVIRVWQV 315          
The following BLAST results are available for this feature:
BLAST of CN182026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GBLP_CAEEL1.820e-4856.02Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_DROME7.648e-4754.22Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SCHPO1.034e-4353.01Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBR2.546e-4251.20Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBB2.546e-4251.20Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIIN1.650e-4147.59Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH1.650e-4147.59Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIMA3.676e-4147.59Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DICDI4.065e-4050.00Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_YEAST1.654e-3344.38Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182026 ID=CN182026; Name=CN182026; organism=Citrus sinensis; type=EST; length=722bp
GCCCCTTTATGTAACATCTAAAAAATAATAAGCCAAACCAAAACAGCAGA
GGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAATATCCTTAAA
AACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAAACTGCCTACA
AAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGTTTGCAATTAC
TCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGATCACACCATC
TGTATAACCACTGAACAAGGTGCTTCCATCAGCACTCCAGTTCAAGCTTG
TGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGTGGTGGCCTCA
GATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCTCGACAATGCT
CTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTCGCCGCACACA
ACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGACAGCACCAGCG
TCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACAACAGAATCAC
ACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGCGACACTGCGA
CGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCTAAGCTTGCAG
TTGCTCAAATTCCACACTTTGAACGAACGGTCCCACGAGGCGGAAACGAT
AGTGGGCTGAAGCGTGTTGGGG
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