CN182024

Overview
NameCN182024
Unique NameCN182024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:122..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_SCHPO (Nascent polypeptide-associated complex subunit beta OS=Schizosaccharomyces pombe GN=btf3 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  239 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKT--TTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 673
            M+  KL K+    R GGKG+ RRK K   K+  +  DDK++Q  LK++ +  +  I+EVN+FK+D  VI F  P V +S+   T  + G  + K L +ILPGI+N LGP++L  LR++AEQ +      G  A    + DD E+P+LV
Sbjct:    1 MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADA----QADDGEIPDLV 144          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_DICDI (Nascent polypeptide-associated complex subunit beta OS=Dictyostelium discoideum GN=nacB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = -3
Query:  239 VEKLMKMAGA-VRTGGKGSVRRKKKAVHKTTTT-DDKRLQSTLKRIGVNAIPAIEEVNIFK-DDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 667
            + +L K+A   VRTGGKGS+RRK++  HK+TT+ DDK+L   L  +GV  I A+EE N FK D  +I F NP VQ   A+ T+V+SG  +TK +  I P +I QLG +NL+ ++K+A+ F   A NA T          D++P+LV
Sbjct:    5 IARLNKLAEERVRTGGKGSMRRKQQVTHKSTTSVDDKKLHVKLANLGVKPIGAVEEANFFKADGNIIHFKNPSVQT--ASKTFVISGKNETKPMASI-PHVIAQLGAENLNQIKKMADAF-SAAKNANT----------DDIPDLV 136          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_YARLI (Nascent polypeptide-associated complex subunit beta OS=Yarrowia lipolytica GN=EGD1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  239 LMKMAGAVRTGGKGSVRRK-KKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF---QKQAPNAGTGAPTTQEDDDDEVPELV 658
            L K +GA ++GGKG+ RR  KK   +  + D+K+L +TLK+     I  I EVN+FK+D  V+ F    V+ S+A+NT+ +SG  Q K + +++P I+ Q+G D L  L++ A QF   Q+QA     G    +E  DDE+P LV
Sbjct:   11 LQKKSGA-QSGGKGTPRRPGKKVAGRNISEDEKKLSATLKKFNAQEITGISEVNMFKEDGTVLHFPKVHVEGSVASNTFAISGPSQQKDIAELIPDILPQMGQDALLQLQQAAVQFSKLQEQAKKTAGGPDAAKEAGDDEIPNLV 154          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB1_YEAST (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae GN=EGD1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 56/143 (39.16%), Postives = 73/143 (51.05%), Query Frame = -3
Query:  239 KLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 661
            KL K++   + GG      KK         DD +LQS L ++    I  + E N FKDD  +   N KV   +AA  NT V  G PQ K LQD+ PGII+QLGP+ +  L +LA Q +K        AP   E  D+ +PELV
Sbjct:   10 KLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAK----APADAEKKDEAIPELV 147          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB1_YEAS7 (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 56/143 (39.16%), Postives = 73/143 (51.05%), Query Frame = -3
Query:  239 KLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 661
            KL K++   + GG      KK         DD +LQS L ++    I  + E N FKDD  +   N KV   +AA  NT V  G PQ K LQD+ PGII+QLGP+ +  L +LA Q +K        AP   E  D+ +PELV
Sbjct:   10 KLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAK----APADAEKKDEAIPELV 147          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_ASHGO (Nascent polypeptide-associated complex subunit beta OS=Ashbya gossypii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = -3
Query:  239 EKLMKMAGAVRTGGKGSVRRK--KKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQ-----EDDDDEVPELV 664
            EKL K+         G  RRK  KK+   +   DD +LQ+ L ++    +  +EE N FKDD  V+ F    VQ +   NT V  G PQ K LQD+ P II QLG +++D L +LA Q Q    NA   AP T+     E  D+++PEL+
Sbjct:    6 EKLAKLQKLSANNKVGGTRRKLAKKSGTASANKDDSKLQAQLAKLKAVTMDQVEEANFFKDDGSVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQDLFPSIIPQLGSESIDALTQLATQLQ----NAQAAAPATEGHEAGEKKDNDIPELI 151          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_LODEL (Nascent polypeptide-associated complex subunit beta OS=Lodderomyces elongisporus GN=EGD1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = -3
Query:  239 EKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAG-TGAPTTQEDDDDEVPELV 664
            EKL K+  +      GS  + KK V   T  DD +L  TL ++    I  +EE N FKDD  V+ F    VQ + AANT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K   + G  G     E+ ++++P+LV
Sbjct:    6 EKLAKLQKSTAKKVGGSRVKAKKGVK--TEQDDTKLIETLGKLKATKIEGVEEANFFKDDGKVLHFNRVGVQGAPAANTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKNPKDFGAAGEAGATEEANEDIPDLV 149          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_KLULA (Nascent polypeptide-associated complex subunit beta OS=Kluyveromyces lactis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = -3
Query:  239 EKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 664
            EKL K+         G  RRK      +++ DD +LQ  L+++    +  +++ N FKDD  V+ F    VQ +   NT V  G PQ K LQ++ P II Q+G D ++ L ++A Q Q  Q  N    AP   E  D ++PELV
Sbjct:    6 EKLAKLQKLSANNKVGGTRRKFAKKSGSSSKDDSKLQDQLQKLRAVTVDNVQQANFFKDDGTVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQELFPDIIPQMGADAINALTQMASQLQSAQGANQQAAAPEA-EGKDIDIPELV 148          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_PICST (Nascent polypeptide-associated complex subunit beta OS=Pichia stipitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = -3
Query:  239 EKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQEDDDDEVPELV 664
            EKL K+  A      GS  + KK V   T  DD +L   L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K       GAP      D+ +P+L+
Sbjct:    6 EKLAKLQKAAAKKVGGSRVKAKKVVK--TEQDDTKLIEALGKLKATKIENVEEANFFREDGKVLHFNRVGVQGAAASNTFAFTGYPQEKNVTQLIPQILPQLGAENLEILRQLAEQLQAGKAPTELNAGAPA---GGDEGIPDLI 145          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_CANGA (Nascent polypeptide-associated complex subunit beta OS=Candida glabrata GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = -3
Query:  239 KLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 661
            KL KM+   + GG    + KK         DD +L + L ++    I  + E N FKDD  V+ F    VQ +   NT V  G  Q K LQ++ PGII+QLG + +  L +LA Q +K   N   G     E  D+ +PELV
Sbjct:   10 KLQKMSAGNKVGGTRRKQAKKTGSGSAGNKDDTKLHNQLAKLHAVTIDNVAEANFFKDDGKVLHFNKVGVQVAPQHNTSVFYGMAQEKNLQELFPGIISQLGGEAIQALSQLAAQMEKAQANENAG-----EAKDEAIPELV 146          
The following BLAST results are available for this feature:
BLAST of CN182024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_SCHPO1.559e-2240.54Nascent polypeptide-associated complex subunit bet... [more]
NACB_DICDI2.251e-2144.52Nascent polypeptide-associated complex subunit bet... [more]
NACB_YARLI1.117e-2040.00Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAST2.575e-1739.16Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAS72.575e-1739.16Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASHGO5.737e-1738.67Nascent polypeptide-associated complex subunit bet... [more]
NACB_LODEL4.857e-1638.36Nascent polypeptide-associated complex subunit bet... [more]
NACB_KLULA9.159e-1535.42Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICST1.562e-1436.55Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANGA1.562e-1435.92Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182024 ID=CN182024; Name=CN182024; organism=Citrus sinensis; type=EST; length=684bp
AAAGGTTTTCACTGGGTTTCACTGGAGCAAAACATTGAATTAAAAGTAAC
AATATCTAGTGTCACAGGGGAGAATCAGATAAAACAAGAGAAAGTTGACT
CGGAAAAGTAAAATAAAAGCTCAAAAAACATAGAAAATATATAGAATAAC
ACAAAGTCCCTCTAGATAAAACTCTCTAAGAAGCAGCGTCAGGTTTCTCT
GTTTTCTCCTCTGCGGCAGCTTCAAACGTCTCGCCTGCCACAAGCTCTGG
GACCTCATCGTCGTCGTCCTCTTGAGTCGTGGGTGCACCAGTTCCTGCAT
TAGGTGCTTGCTTCTGAAACTGCTCCGCCAACTTCCTCAGGTTGTCCAAA
TTATCTGGCCCCAATTGATTGATAATTCCAGGGAGAATATCCTGCAACTT
CTTGGTTTGTGGGGCACCACTAACTACCCATGTGTTGGCAGCAATTGAAG
CTTGTACTTTGGGATTTAAGAACTGAATAACGACGTCATCCTTGAAAATG
TTAACTTCCTCAATTGCAGGAATAGCATTCACTCCTATTCTCTTCAAGGT
GCTCTGAAGCCTCTTGTCATCGGTGGTTGTTGTCTTATGAACAGCCTTCT
TCTTTCTTCTCACACTACCCTTACCACCGGTGCGAACTGCACCGGCCATC
TTCATTAGCTTCTCAACATTCATCTTGGAGCTAG
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