CN182024

Overview
NameCN182024
Unique NameCN182024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:122..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = -3
Query:  239 KLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 661
            KL K + A + GG     R K   +  T  DD +L   L ++    I  IEE N FK+D  V+ F    VQ +   NT+ ++G PQ K +  ++P I+ QLG +NL+ LRKLAEQ Q  + P    G     E+D   +P+L+
Sbjct:   10 KLQKASVAKKVGGS----RVKAKKNVKTEQDDTKLIEALGKLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQAGKNPELNAGGAEGAEED---IPDLI 145          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_CANAL (Nascent polypeptide-associated complex subunit beta OS=Candida albicans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  239 EKLMKM--AGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQED-DDDEVPELV 664
            EKL K+  + A + GG     R K   +  T  DD +L   L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K   +  TG+     D   +++P+LV
Sbjct:    6 EKLAKLQKSSAKKVGGS----RVKAKKNIKTEQDDTKLIEALGKLKATKIEGVEEANFFREDGKVLHFNRVGVQGAPASNTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKTPKDFNTGSANAAADAGGEDIPDLV 149          
BLAST of CN182024 vs. ExPASy Swiss-Prot
Match: NACB_PICGU (Nascent polypeptide-associated complex subunit beta OS=Pichia guilliermondii GN=EGD1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 49/145 (33.79%), Postives = 77/145 (53.10%), Query Frame = -3
Query:  239 EKLMKMA-GAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 664
            EKL K+  GA +  G   V+ KK    +    DD +L   L ++    + A+EE N FK+D  V+ F    VQ++   N    +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  + P+ G          D+++P+L+
Sbjct:    6 EKLAKLQQGAAKKVGGQRVKAKKVKSEQ----DDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSAAQHNVCAFTGYPQEKDVTQLIPQILPQLGAENLEILRQLAEQIQAGKTPSMG----GENAGADEDIPDLI 142          
The following BLAST results are available for this feature:
BLAST of CN182024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_DEBHA3.481e-1436.36Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANAL1.013e-1335.14Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICGU2.494e-1233.79Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182024 ID=CN182024; Name=CN182024; organism=Citrus sinensis; type=EST; length=684bp
AAAGGTTTTCACTGGGTTTCACTGGAGCAAAACATTGAATTAAAAGTAAC
AATATCTAGTGTCACAGGGGAGAATCAGATAAAACAAGAGAAAGTTGACT
CGGAAAAGTAAAATAAAAGCTCAAAAAACATAGAAAATATATAGAATAAC
ACAAAGTCCCTCTAGATAAAACTCTCTAAGAAGCAGCGTCAGGTTTCTCT
GTTTTCTCCTCTGCGGCAGCTTCAAACGTCTCGCCTGCCACAAGCTCTGG
GACCTCATCGTCGTCGTCCTCTTGAGTCGTGGGTGCACCAGTTCCTGCAT
TAGGTGCTTGCTTCTGAAACTGCTCCGCCAACTTCCTCAGGTTGTCCAAA
TTATCTGGCCCCAATTGATTGATAATTCCAGGGAGAATATCCTGCAACTT
CTTGGTTTGTGGGGCACCACTAACTACCCATGTGTTGGCAGCAATTGAAG
CTTGTACTTTGGGATTTAAGAACTGAATAACGACGTCATCCTTGAAAATG
TTAACTTCCTCAATTGCAGGAATAGCATTCACTCCTATTCTCTTCAAGGT
GCTCTGAAGCCTCTTGTCATCGGTGGTTGTTGTCTTATGAACAGCCTTCT
TCTTTCTTCTCACACTACCCTTACCACCGGTGCGAACTGCACCGGCCATC
TTCATTAGCTTCTCAACATTCATCTTGGAGCTAG
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