CN182021

Overview
NameCN182021
Unique NameCN182021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  352 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  352 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = -1
Query:   40 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 228
            +TAE+  KSRIF+I WSPD A+VRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD  KDR
Sbjct:   75 LTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            VTAE+ QKSRIF+I WSP +A+V+SKM+YASS  +FK  L+GIQVELQATD SE+ LD  KDRA
Sbjct:   75 VTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.331e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.965e-17
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  352 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            VT +NC+ S+IFFI WSP+ +R+R KM+YA+SK   +R LDG+  ELQATDP+EMG D  +DRA
Sbjct:   66 VTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            VT +NCQKS+IFFIAWSP  +R+R+K++YA+SK   +R LDG+  E+QATD SEMG DV + RA
Sbjct:   79 VTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 36/65 (55.38%), Postives = 53/65 (81.54%), Query Frame = -1
Query:   34 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 228
            V+ +NC+KS+IFFI+WSP  +R+R+K IYA S+++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   85 VSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
The following BLAST results are available for this feature:
BLAST of CN182021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RUB1_ORYSJ3.503e-1862.32NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH3.503e-1862.32NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
ADF4_ORYSJ3.503e-1866.67Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
NEDD8_DROME4.575e-1857.75NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
ADF3_MAIZE5.975e-1868.75Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
NEDD8_CAEEL1.331e-1759.15NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH2.965e-1760.87NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
ADF9_ARATH3.873e-1759.38Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF5_ORYSJ3.873e-1760.94Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF10_ORYSJ1.127e-1655.38Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182021 ID=CN182021; Name=CN182021; organism=Citrus sinensis; type=EST; length=558bp
GAGGCAGCAATTGAGATCAGGAGCCTTTATTTAGTTGGCACGGTCTTTAA
ATACGTCAAGACCCATCTCAGATGGATCAGTTGCCTGCAGCTCCACTTGA
ATGCCATCTAGCTCTCTCTTGAACCTGTCCTTGGAGCTTGCATAAATCAT
CTTGCTTCTTACTCTTGCAGTGTCGGGAGACCATGCAATGAAGAAAATCC
TGCTTTTTTGGCAGTTCTCTGCGGTAACCCGGACCAGCAGCGGCTGATCT
TCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACAACATC
CAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCA
GATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGA
GCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGG
ATCCCCCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGA
CGGCCGCACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACC
TTGTGTTG
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