CN182021

Overview
NameCN182021
Unique NameCN182021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = -1
Query:   34 KSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 207
            +S+IFF++WSP  A VRSKM+YASS + FK+ELDG+Q++LQATDPSE+ LDV KD  +
Sbjct:   93 RSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.627e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVL 71          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.183e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVL 71          
The following BLAST results are available for this feature:
BLAST of CN182021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
NEDD8_RAT1.922e-1654.93NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT1.922e-1654.93NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE1.922e-1654.93NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN1.922e-1654.93NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.922e-1654.93NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ2.510e-1652.11NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
ADF3_ORYSJ3.278e-1663.79Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]
RUB3_ARATH1.627e-1553.52NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI3.625e-1552.11NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO6.183e-1550.70Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001N08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182021 ID=CN182021; Name=CN182021; organism=Citrus sinensis; type=EST; length=558bp
GAGGCAGCAATTGAGATCAGGAGCCTTTATTTAGTTGGCACGGTCTTTAA
ATACGTCAAGACCCATCTCAGATGGATCAGTTGCCTGCAGCTCCACTTGA
ATGCCATCTAGCTCTCTCTTGAACCTGTCCTTGGAGCTTGCATAAATCAT
CTTGCTTCTTACTCTTGCAGTGTCGGGAGACCATGCAATGAAGAAAATCC
TGCTTTTTTGGCAGTTCTCTGCGGTAACCCGGACCAGCAGCGGCTGATCT
TCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACAACATC
CAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCA
GATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGA
GCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGG
ATCCCCCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGA
CGGCCGCACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACC
TTGTGTTG
back to top