CN182020

Overview
NameCN182020
Unique NameCN182020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 34/65 (52.31%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            V+ +NC+KS+IFFI+WSP  + +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   80 VSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  499 RIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            +I FIAWSP TA++R KMIY+S+KDRFKRELDGIQVE  ATD +++ LD  + R N
Sbjct:   78 KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -3
Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  490 QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 663
            Q+++I FI W+PD+A ++SKM+Y S+KD  K++L GIQVE+QATD +E+  D   +RA
Sbjct:   76 QRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
The following BLAST results are available for this feature:
BLAST of CN182020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RUB1_YEAST1.129e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ADF8_ORYSJ1.249e-1452.31Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF11_ARATH4.745e-1464.29Putative actin-depolymerizing factor 11 OS=Arabido... [more]
ANUB1_HUMAN4.910e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]
ACTP_ACACA6.413e-1151.72Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182020 ID=CN182020; Name=CN182020; organism=Citrus sinensis; type=EST; length=698bp
GCCTCTGCTGGTCCGGAGGATCCCCTCTTTGTCCTGGATCTTGGCCTTCA
CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCG
GTCAACGTCTTGACGAAGATCTGCATTCCTCCCCTCAGGCGCAACACAAG
GTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCGT
CCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATC
CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCT
CTCCACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCT
GCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGG
ATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA
GATCAGCCGCTGCTGGTCCGGGTTACCGCAGAGAACTGCCAAAAAAGCAG
GATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGA
TGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATT
CAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATT
TAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAATTGCTGCCT
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