CN182020 | Citrus Genome Database

Overview


Name	CN182020
Unique Name	CN182020
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	698

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.369e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGI
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 36

[Close]

BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -3

Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3

Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3

Query:   19 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 126
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 36

The following BLAST results are available for this feature:

BLAST of CN182020 vs. ExPASy Swiss-Prot

BLAST of CN182020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125


Match Name	E-value	Identity	Description
UBIQ_ACECL	6.369e-35	96.05	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	8.318e-35	97.37	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	8.318e-35	97.37	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	1.086e-34	96.05	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	1.086e-34	96.05	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	1.419e-34	96.05	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	1.419e-34	96.05	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	1.853e-34	96.05	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	1.853e-34	96.05	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	1.853e-34	96.05	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001N08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN182020 ID=CN182020; Name=CN182020; organism=Citrus sinensis; type=EST; length=698bp
GCCTCTGCTGGTCCGGAGGATCCCCTCTTTGTCCTGGATCTTGGCCTTCA
CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCG
GTCAACGTCTTGACGAAGATCTGCATTCCTCCCCTCAGGCGCAACACAAG
GTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCGT
CCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATC
CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCT
CTCCACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCT
GCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGG
ATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA
GATCAGCCGCTGCTGGTCCGGGTTACCGCAGAGAACTGCCAAAAAAGCAG
GATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGA
TGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATT
CAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATT
TAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAATTGCTGCCT