CN182020

Overview
NameCN182020
Unique NameCN182020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -3
Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = -3
Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -3
Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -3
Query:  355 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 471
            PDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = -3
Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = -3
Query:  355 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 468
            DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VTAENCQKS+IFFIAWSPDTA+VR KMIYASSKDRFKRELDGIQVELQATDP+EMGLDVFK R N
Sbjct:   73 VTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = -3
Query:  127 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 354
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = -3
Query:  355 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 468
            DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VTAENCQKSRIFFIAW PDTARVRSKMIYASSKDRFKRELDGIQVELQA DP+EMGLDV + RAN
Sbjct:   75 VTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -3
Query:  133 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 321
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          

HSP 2 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = -3
Query:  361 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 471
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   27 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VT ENCQKS+IFFIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVELQATDP+E+GLDV + RAN
Sbjct:   75 VTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVF+ RAN
Sbjct:   75 VTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN*IK 675
            +T EN QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EMGLDVF+ RA  I+
Sbjct:   75 MTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRAGGIE 142          
The following BLAST results are available for this feature:
BLAST of CN182020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.049e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA6.591e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP3.385e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
ADF2_ARATH9.848e-2890.77Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
UBIL_NPVAC2.194e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
ADF1_PETHY6.384e-2790.77Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
UBIQ_LUMTE8.337e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
ADF7_ORYSJ1.857e-2687.69Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF1_ARATH3.168e-2687.69Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF2_PETHY4.138e-2686.76Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182020 ID=CN182020; Name=CN182020; organism=Citrus sinensis; type=EST; length=698bp
GCCTCTGCTGGTCCGGAGGATCCCCTCTTTGTCCTGGATCTTGGCCTTCA
CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCG
GTCAACGTCTTGACGAAGATCTGCATTCCTCCCCTCAGGCGCAACACAAG
GTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCGT
CCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATC
CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCT
CTCCACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCT
GCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGG
ATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA
GATCAGCCGCTGCTGGTCCGGGTTACCGCAGAGAACTGCCAAAAAAGCAG
GATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGA
TGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATT
CAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATT
TAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAATTGCTGCCT
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