CN182020

Overview
NameCN182020
Unique NameCN182020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  475 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ K R N
Sbjct:   76 TVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VT ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ + RA+
Sbjct:   75 VTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  475 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ + R N
Sbjct:   76 TIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 44/65 (67.69%), Postives = 61/65 (93.85%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VT+ENCQKS+IFFIAWSPD++R+R+KM+YA+SK+RF+RELDG+  E+QATDP+EM L+V ++RA+
Sbjct:   79 VTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  127 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  127 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  127 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  127 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 348
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = -3
Query:  118 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 354
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79          
BLAST of CN182020 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 40/65 (61.54%), Postives = 58/65 (89.23%), Query Frame = 1
Query:  472 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 666
            VT ENCQKS+IFF+AWSP  +R+R+KM+YA+SK+RF+RELDG+  E+QATDPSE+ +++ ++RA+
Sbjct:   81 VTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
The following BLAST results are available for this feature:
BLAST of CN182020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ADF2_MAIZE1.127e-2378.13Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF9_ORYSJ2.510e-2376.92Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF1_MAIZE3.279e-2376.56Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF_VITVI8.075e-2267.69Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
RUB1_DESAN1.989e-2064.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ2.598e-2063.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.598e-2063.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.598e-2063.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME2.598e-2058.23NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
ADF11_ORYSJ4.431e-2061.54Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182020 ID=CN182020; Name=CN182020; organism=Citrus sinensis; type=EST; length=698bp
GCCTCTGCTGGTCCGGAGGATCCCCTCTTTGTCCTGGATCTTGGCCTTCA
CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCG
GTCAACGTCTTGACGAAGATCTGCATTCCTCCCCTCAGGCGCAACACAAG
GTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCGT
CCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATC
CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCT
CTCCACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCT
GCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGG
ATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA
GATCAGCCGCTGCTGGTCCGGGTTACCGCAGAGAACTGCCAAAAAAGCAG
GATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGA
TGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATT
CAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATT
TAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAATTGCTGCCT
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