CN188846

Overview
NameCN188846
Unique NameCN188846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15
Identity = 62/205 (30.24%), Postives = 98/205 (47.80%), Query Frame = 1
Query:  103 SRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDIL-----PFGLMDPSF-----PT--RTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPS----WSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERK 669
            +R    +L    A + GE +D  ++  V+   + +  +  PRR     L       G   P+      PT   T+ Q  + M+R+ ++    P +      GQV      KE+++  K+R+++PGL             L IKG+H+AEE  G P     WS  S+  Y+T L LPD+ + + +KAELKNGVL + IP+T   +K
Sbjct:   31 NRHNPMKLNRFMATSAGEQED-KMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLM----GQV------KEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKK 224          
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 46/145 (31.72%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  259 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERKVIDVQIL 690
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL             L+IK E   E    +          Y +R++L  N  K D +KAE+KNGVL +++PK   E K    Q++
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQR------RRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
BLAST of CN188846 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 61/197 (30.96%), Postives = 87/197 (44.16%), Query Frame = 1
Query:   94 PATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAE----RRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQL-PDNCEKDKVKAELKNGVLYISIPKTNVERK 669
            PA     A R  AV   +   N    +  H    +          RRP R A   +P    D      +  Q L  +  L++D     GR+   G   +R  W+ KE E  + +R DMPGL             LVIKGE   +EAG D    GA+ + Y  R++L P+    D++KAE+KNGVL + +PK   E++
Sbjct:   24 PAQGAASALRPVAVAGGSRAYNTGAQLRRHERDESDDDSGRGYDTRRPTRDAT--MPAFFSDVFRDPFSAPQSLGRLLSLMDDLATPAGRA---GAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGE-KEAGED---EGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQR 211          
The following BLAST results are available for this feature:
BLAST of CN188846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS26M_ARATH1.716e-1530.2426.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU9.415e-1431.72Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS24M_ORYSJ3.029e-1230.9624.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188846 ID=CN188846; Name=CN188846; organism=Citrus sinensis; type=EST; length=760bp
ACATTATCTATCTCATCATCATCACCCTTGGTATCGCGCCCGTGAAGGAC
CTCAATAGCTAGGAGAAATGTGGCGCCATGCTCTGTAACCTTACCGGCAA
CGTCAAGGAAAGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGT
GGGGAGAACAAGGATACTTCGGTTGACGTCCATGTTAATTCCGGTAACCA
AGGAACCCAAGCGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTTAC
CTTTCGGTTTGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATG
CTGGACACAATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAG
GAGCCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAG
AGGAGGAAAATGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAG
GAGGATGTCAAAGTGTCGGTGGAAGATGATGTCCTTGTCATTAAAGGAGA
GCACAGGGCAGAAGAAGCTGGAGGTGATCCGAGTTGGTCTGGTGCAAGTT
TTAGCTCTTACGATACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGAT
AAGGTCAAGGCAGAGCTCAAGAATGGTGTTCTTTACATTTCAATTCCTAA
GACCAATGTGGAGCGCAAGGTCATTGATGTTCAGATTCTGTAATTATAAT
GATGTGTGCCTAGCGCAATGTGTATGTTAAGGTTTTGTGATCTACATGTC
CAGCTTTTTA
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