CN182010

Overview
NameCN182010
Unique NameCN182010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VRS+QMEGL+WGASKL PVGYGIKKLQI
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQI 192          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE +RS+QM+GLLWG+SKL PVGYGIKKLQI
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQI 191          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VR+VQM+GL+WG+SKL PVGYGIKKLQI
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQI 229          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIM 559
            +LLDVKPWDDETDMK++E  VR+++MEGLLWGASKL PVGYGI KLQIM
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIM 187          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQI 189          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQI 189          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIM 559
            VLLDVKPWDDETDMK++E  VR+++M+GLLWGASKL PVGYGI KLQIM
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIM 187          

HSP 2 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 2
Query:    2 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHI 178
            +AF +V +  GLK+L+ +L   SYI+GY  SK D++V+ AL KAPS++ VNV+RWY+HI
Sbjct:    1 MAFGDVTTPQGLKELNAFLADNSYISGYTPSKADLSVFDALGKAPSADNVNVARWYRHI 59          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQI 189          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQI 189          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.072e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQI 189          
The following BLAST results are available for this feature:
BLAST of CN182010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF1B_XENTR1.888e-1887.50Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_XENLA1.224e-1783.33Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1D_XENLA1.598e-1783.33Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B2_BOMMO2.087e-1779.59Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_MOUSE4.649e-1781.25Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN4.649e-1781.25Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_DROME4.649e-1779.59Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B_CHICK4.649e-1781.25Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_BOVIN4.649e-1781.25Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_RABIT6.072e-1781.25Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182010 ID=CN182010; Name=CN182010; organism=Citrus sinensis; type=EST; length=614bp
CGTCGCATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATG
AATACCTTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGAT
GATATCACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGT
CAATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTG
GCGTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTT
GCTACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGA
CGATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTG
CCGAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCT
GGCAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGA
CATGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTAC
TCTGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTG
CAAATAATGCTTACAAATTGTGGATGACTTGGTGTCTGTTGACACCCTCA
TTGAGGAACACCTG
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