CN182010

Overview
NameCN182010
Unique NameCN182010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WGASKL PVGYGI+KLQI
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQI 244          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQI 245          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQI 245          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQI 245          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQI 245          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQI 244          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQI 556
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQI 244          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIML 562
            +LLDVKPWDDETDM +LE+ VRS++M+GL+WGASKL  VGYGIKKL I L
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINL 182          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIM 559
            V+LD+KPWDDETDM ++E+ VRSVQM+GL+WGA+KL P+ YGIKKL IM
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIM 172          
BLAST of CN182010 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 33/49 (67.35%), Postives = 45/49 (91.84%), Query Frame = 2
Query:  413 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIM 559
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI+
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQII 227          
The following BLAST results are available for this feature:
BLAST of CN182010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF1D_RABIT1.767e-1679.17Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT3.014e-1677.08Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MOUSE3.014e-1677.08Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1D_MACFA3.014e-1677.08Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN3.014e-1677.08Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_SHEEP5.140e-1677.08Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1D_BOVIN5.140e-1677.08Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B_DICDI3.332e-1574.00Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1B_ARTSA3.332e-1571.43Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]
EF1B2_CAEEL5.683e-1567.35Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182010 ID=CN182010; Name=CN182010; organism=Citrus sinensis; type=EST; length=614bp
CGTCGCATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATG
AATACCTTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGAT
GATATCACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGT
CAATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTG
GCGTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTT
GCTACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGA
CGATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTG
CCGAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCT
GGCAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGA
CATGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTAC
TCTGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTG
CAAATAATGCTTACAAATTGTGGATGACTTGGTGTCTGTTGACACCCTCA
TTGAGGAACACCTG
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