CN182008

Overview
NameCN182008
Unique NameCN182008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHIE6 (Elongation factor Ts OS=Rhizobium etli (strain CIAT 652) GN=tsf PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ
Sbjct:    8 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSEGTKAVVVEVNSETDFVARNDAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_MESSB (Elongation factor Ts OS=Mesorhizobium sp. (strain BNC1) GN=tsf PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+KQLRE T A M D K AL +   D+EAA+  LRK+G   A KK+ RTA EGL+ LA + + A  +E+N ETDFV+RN+ FQ
Sbjct:    7 LVKQLREVTGAGMMDCKTALAETGGDLEAAVDWLRKKGISKADKKAGRTAAEGLIGLAADATSAVAVEVNSETDFVARNDAFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_OCHA4 (Elongation factor Ts OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tsf PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  322 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            +L+K+LR+ T A M D K AL + + DIEAA+  LR +G   A KK+ RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ
Sbjct:    6 SLVKELRDLTGAGMMDCKTALAETNGDIEAAVDWLRAKGIAKADKKAGRTAAEGLVGVAASGNKAVVVEVNSETDFVARNDAFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_EXIS2 (Elongation factor Ts OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=tsf PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K ALV+ D D+ AA+  LR++G   A+ K  R A EGL A+A N +KAA++E+N ETDFV++NE FQ
Sbjct:    7 MVKELREKTGAGMLDCKKALVEADGDMNAAIDFLREKGIAKAAAKGDRIAAEGLTAVAVNGNKAALVEINSETDFVAKNERFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHILW (Elongation factor Ts OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tsf PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL +   D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ
Sbjct:    8 MVKELREKTGAGMMDCKKALAETGGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSQGTKAVVVEVNSETDFVARNDAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHIEC (Elongation factor Ts OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tsf PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL +   D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ
Sbjct:    8 MVKELREKTGAGMMDCKKALAETSGDMEAAIDWLRAKGIAKADKKSGRTAAEGLVGVSSEGTKAVVVEVNSETDFVARNDAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_METSB (Elongation factor Ts OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=tsf PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K LRE+T A M D K AL +   DIEAA+  LRK+G   A+KKS R A EGL+A+A +E+   V+E+N ETDFV+RNE FQ
Sbjct:    8 MVKDLREKTGAGMMDCKNALNETGGDIEAAIDWLRKKGLSKAAKKSGRIAAEGLVAVAVHETDGVVVEVNSETDFVARNEEFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_BARQU (Elongation factor Ts OS=Bartonella quintana GN=tsf PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  328 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            +K+LRE + A M D K AL D + D+EAA+  LRK+G   A KK+ RTA EGL+ +   ++ A ++E+N ETDFV+RN++FQ
Sbjct:    8 VKELRELSGAGMMDCKAALADTNGDMEAAVDWLRKKGIAKADKKAGRTAAEGLIGIVSKDTSAVLVEINSETDFVARNDLFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHIL3 (Elongation factor Ts OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tsf PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL +   D+EAA+  LR +G   A KKS RTA EGL+ ++   +KA V+E+N ETDFV+RN+ FQ
Sbjct:    8 MVKELREKTGAGMMDCKKALAETAGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVSSQGTKAVVVEVNSETDFVARNDAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_AGRT5 (Elongation factor Ts OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=tsf PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE++ A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A    KA V+ELN ETDFV+RN+ FQ
Sbjct:    8 MVKELREKSGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVATMGHKAVVVELNSETDFVARNDAFQ 90          
The following BLAST results are available for this feature:
BLAST of CN182008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_RHIE62.897e-1650.60Elongation factor Ts OS=Rhizobium etli (strain CIA... [more]
EFTS_MESSB2.897e-1653.01Elongation factor Ts OS=Mesorhizobium sp. (strain ... [more]
EFTS_OCHA43.784e-1651.19Elongation factor Ts OS=Ochrobactrum anthropi (str... [more]
EFTS_EXIS23.784e-1651.81Elongation factor Ts OS=Exiguobacterium sibiricum ... [more]
EFTS_RHILW4.942e-1650.60Elongation factor Ts OS=Rhizobium leguminosarum bv... [more]
EFTS_RHIEC4.942e-1650.60Elongation factor Ts OS=Rhizobium etli (strain CFN... [more]
EFTS_METSB4.942e-1654.22Elongation factor Ts OS=Methylocella silvestris (s... [more]
EFTS_BARQU4.942e-1648.78Elongation factor Ts OS=Bartonella quintana GN=tsf... [more]
EFTS_RHIL36.454e-1650.60Elongation factor Ts OS=Rhizobium leguminosarum bv... [more]
EFTS_AGRT56.454e-1651.81Elongation factor Ts OS=Agrobacterium tumefaciens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182008 ID=CN182008; Name=CN182008; organism=Citrus sinensis; type=EST; length=689bp
GAGGCTCTTCGGTAGTCATCAGTATCAACACCAGCCGTCGGTCCTTACTT
TTACCTCCGGTTATTCAATAGCATAAAGGGTACTGGAATGGCCTGTTTTC
GAAGTGCAAAGCATCCATTTAGGATTTTCTTCTACAACAGACTCATTGCT
GCCACAAACAGTAAAAATGGATACTCTACTTGTGCAAGCAAAGGGACTCC
GGTTTATCAAGCTAGGCAGATCAAGGACTTATTCTCATTCAAATACCTGA
ACCCAAAATCCTCTTTTGCTTTAATTTCAAGAAACTTCAGTGATCAAGCT
CCTGCGGCTACGGAGCAAGTGAATCTCATTAAGCAGTTAAGGGAACAAAC
AAGTGCTCCAATGAAGGATGTCAAGTTGGCTCTTGTTGATTGCGATTGGG
ATATTGAGGCTGCACTGAAGGAATTGAGGAAACGAGGGAAAGTTCTGGCG
TCAAAGAAGTCGTCTCGAACTGCCACTGAGGGCTTACTTGCTTTAGCGCA
GAATGAGAGCAAGGCTGCTGTTATTGAGCTTAATTGTGAGACCGATTTTG
TTTCCAGGAATGAGATATTTCAGTACTTGGCCTTAGCTTTGGCAAAGCAA
GCTTTGGTGGCTGAGAATGTTTCACAGCCAGTATCTGGGCTCTTTCCTGT
TGGTCCTGAGTATTTGGAGGGCTTGAAGTTGAATCTTGA
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