CN182008

Overview
NameCN182008
Unique NameCN182008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_STAAR (Elongation factor Ts OS=Staphylococcus aureus (strain MRSA252) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_STAAC (Elongation factor Ts OS=Staphylococcus aureus (strain COL) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_STAA8 (Elongation factor Ts OS=Staphylococcus aureus (strain NCTC 8325) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_STAA3 (Elongation factor Ts OS=Staphylococcus aureus (strain USA300) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            AT    L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    + A ++E+N ETDFV+RNE FQ
Sbjct:    2 ATISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETDFVARNEGFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_SILST (Elongation factor Ts OS=Silicibacter sp. (strain TM1040) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE T A M D K ALV+ D D+EAA+  LR +G   A+KKS RTA EGL+A+  +  K   +E+N ETDFV++N  FQ
Sbjct:    7 MVKELRESTGAGMMDAKKALVENDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVVVDGGKGVAVEVNSETDFVAKNGEFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_METRJ (Elongation factor Ts OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+A+      AAV+E+N ETDFV+RN+ FQ
Sbjct:    8 MVKELREKTGAGMMDCKGALNETQGDIEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGHHAAVVEVNSETDFVARNDAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_MAGSA (Elongation factor Ts OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  322 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            +L+K+LRE+T A M D K AL +   D+EAA+  LRK+G   A+KK+ R A EGL+ +A   +K   +E+N ETDFV+RN+ FQ
Sbjct:    7 SLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGTKGVAVEVNAETDFVARNDQFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_HYPNA (Elongation factor Ts OS=Hyphomonas neptunium (strain ATCC 15444) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K+LRE+T A M D K ALV+ + D  AA++ LR +G   A+KKS R A EGL+A  L+ +    A++ELN ETDFV+RNEIFQ
Sbjct:    8 LVKELREKTGAGMMDAKKALVENNGDQAAAIEWLRAKGLSKAAKKSDRAAAEGLVAVKLSDDGKSGAIVELNAETDFVARNEIFQ 92          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBB (Elongation factor Ts OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  328 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIF 570
            +K+LRE+T A M D K AL + D DIE A++ LR++G   A+KKS R A EGL+   +++++   A++ELNCETDFV+ NE F
Sbjct:    7 VKELRERTGAGMMDCKKALTETDGDIEKAVEVLREKGLAAAAKKSGRVAAEGLVKTYISEDKKSGAIVELNCETDFVAANEDF 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBA (Elongation factor Ts OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  328 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIF 570
            +K+LRE+T A M D K AL + D DIE A++ LR++G   A+KKS R A EGL+   +++++   A++ELNCETDFV+ NE F
Sbjct:    7 VKELRERTGAGMMDCKKALTETDGDIEKAVEVLREKGLAAAAKKSGRVAAEGLVKTYISEDKKSGAIVELNCETDFVAANEDF 89          
The following BLAST results are available for this feature:
BLAST of CN182008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_STAAR3.203e-1547.19Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAAC3.203e-1547.19Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAA83.203e-1547.19Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_STAA33.203e-1547.19Elongation factor Ts OS=Staphylococcus aureus (str... [more]
EFTS_SILST3.203e-1550.60Elongation factor Ts OS=Silicibacter sp. (strain T... [more]
EFTS_METRJ3.203e-1551.81Elongation factor Ts OS=Methylobacterium radiotole... [more]
EFTS_MAGSA3.203e-1548.81Elongation factor Ts OS=Magnetospirillum magneticu... [more]
EFTS_HYPNA3.203e-1552.94Elongation factor Ts OS=Hyphomonas neptunium (stra... [more]
EFTS_CLOBB3.203e-1549.40Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBA3.203e-1549.40Elongation factor Ts OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182008 ID=CN182008; Name=CN182008; organism=Citrus sinensis; type=EST; length=689bp
GAGGCTCTTCGGTAGTCATCAGTATCAACACCAGCCGTCGGTCCTTACTT
TTACCTCCGGTTATTCAATAGCATAAAGGGTACTGGAATGGCCTGTTTTC
GAAGTGCAAAGCATCCATTTAGGATTTTCTTCTACAACAGACTCATTGCT
GCCACAAACAGTAAAAATGGATACTCTACTTGTGCAAGCAAAGGGACTCC
GGTTTATCAAGCTAGGCAGATCAAGGACTTATTCTCATTCAAATACCTGA
ACCCAAAATCCTCTTTTGCTTTAATTTCAAGAAACTTCAGTGATCAAGCT
CCTGCGGCTACGGAGCAAGTGAATCTCATTAAGCAGTTAAGGGAACAAAC
AAGTGCTCCAATGAAGGATGTCAAGTTGGCTCTTGTTGATTGCGATTGGG
ATATTGAGGCTGCACTGAAGGAATTGAGGAAACGAGGGAAAGTTCTGGCG
TCAAAGAAGTCGTCTCGAACTGCCACTGAGGGCTTACTTGCTTTAGCGCA
GAATGAGAGCAAGGCTGCTGTTATTGAGCTTAATTGTGAGACCGATTTTG
TTTCCAGGAATGAGATATTTCAGTACTTGGCCTTAGCTTTGGCAAAGCAA
GCTTTGGTGGCTGAGAATGTTTCACAGCCAGTATCTGGGCTCTTTCCTGT
TGGTCCTGAGTATTTGGAGGGCTTGAAGTTGAATCTTGA
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