CN182008

Overview
NameCN182008
Unique NameCN182008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_BARHE (Elongation factor Ts OS=Bartonella henselae GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  328 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            +K+LRE + A M D K AL + + D+EAA+  LRK+G   A KK+ RTA EGL+ +   +  A ++E+N ETDFV+RN++FQ
Sbjct:    8 VKELRELSGAGMMDCKAALAETNGDMEAAVDWLRKKGIAKADKKAGRTAAEGLIGVVSQDLSAVLVEINSETDFVARNDVFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_AZOC5 (Elongation factor Ts OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tsf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K+LR++T A M D K AL + + DIEAA+  LRK+G   A+KK+ R A EGL+A+  +   AA IE+N ETDFV+RN  FQ
Sbjct:    8 LVKELRDKTGAGMMDCKAALTENNGDIEAAIDWLRKKGLAKAAKKAGRVAAEGLVAVESSGHYAAAIEVNAETDFVARNADFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_WOLSU (Elongation factor Ts OS=Wolinella succinogenes GN=tsf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 43/85 (50.59%), Postives = 64/85 (75.29%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+KQLRE T A M D K ALV+ D DIE A++ LR++G   A+KK+ R A+EG+++  +A + SKA+++E+N ETDFV++NE F+
Sbjct:    8 LVKQLREMTDAGMMDCKKALVETDGDIEKAVEYLREKGLSKAAKKADRVASEGVVSVEVASDFSKASLLEINSETDFVAKNEQFK 92          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_STAHJ (Elongation factor Ts OS=Staphylococcus haemolyticus (strain JCSC1435) GN=tsf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K+LRE+T A M D K AL + D DI+ A+  LR++G   A+KK+ R A EGL+ +    ++AA++E+N ETDFV+RNE FQ
Sbjct:    7 LVKELRERTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVEVKGNEAAIVEINSETDFVARNEGFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_PHOPR (Elongation factor Ts OS=Photobacterium profundum GN=tsf PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIF 570
            AT    L+K+LRE+T+A M D K ALV+ D DIE A+  +RK G   A+KKS   A EG + + + +  AA++E+NC+TDFV+++  F
Sbjct:    2 ATVTAALVKELRERTAAGMMDCKKALVEADGDIELAIDNMRKSGAAKAAKKSGNIAAEGTIIIKEVDGIAAILEVNCQTDFVAKDASF 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_OCEIH (Elongation factor Ts OS=Oceanobacillus iheyensis GN=tsf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL + + DIE A+  LR++G   A+KK+ R A EGL  +    +KAA+IE+NCETDFV++N+ F+
Sbjct:    7 MVKELREKTGAGMMDCKKALQETNGDIEQAIDFLREKGMAKAAKKADRVAAEGLTHIEVEGNKAAIIEVNCETDFVTKNDQFK 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_EXISA (Elongation factor Ts OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=tsf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K ALV+ D D++AA+  LR++G   A+ K  R A EGL A+A   +KA ++E+N ETDFV++NE FQ
Sbjct:    7 MVKELREKTGAGMLDCKKALVETDGDMQAAIDFLREKGIAKAAAKGDRIAAEGLTAVAVEGNKAVLVEINSETDFVAKNEKFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_SILPO (Elongation factor Ts OS=Silicibacter pomeroyi GN=tsf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K+LR+ T A M D K AL + D D+EAA+  LR +G   A+KKS RTA EGL+A+     K   +E+N ETDFV++N  FQ
Sbjct:    7 LVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVVVEGGKGVAVEVNSETDFVAKNSDFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHOPT (Elongation factor Ts OS=Rhodopseudomonas palustris (strain TIE-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            AT    ++K+LRE T   M D K AL + D +I+AA+  LRK+G   A+KK+ R A EGL+    + +K  VIE+N ETDFV+RNE FQ
Sbjct:    2 ATITAAMVKELRETTGVGMMDCKQALAETDGNIDAAIDWLRKKGLSKAAKKAGRVAAEGLIGALTDGTKGVVIEVNSETDFVARNEQFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHOPA (Elongation factor Ts OS=Rhodopseudomonas palustris GN=tsf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  307 ATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            AT    ++K+LRE T   M D K AL + D +I+AA+  LRK+G   A+KK+ R A EGL+    + +K  VIE+N ETDFV+RNE FQ
Sbjct:    2 ATITAAMVKELRETTGVGMMDCKQALAETDGNIDAAIDWLRKKGLSKAAKKAGRVAAEGLIGALTDGTKGVVIEVNSETDFVARNEQFQ 90          
The following BLAST results are available for this feature:
BLAST of CN182008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_BARHE3.203e-1547.56Elongation factor Ts OS=Bartonella henselae GN=tsf... [more]
EFTS_AZOC53.203e-1551.81Elongation factor Ts OS=Azorhizobium caulinodans (... [more]
EFTS_WOLSU4.184e-1550.59Elongation factor Ts OS=Wolinella succinogenes GN=... [more]
EFTS_STAHJ4.184e-1549.40Elongation factor Ts OS=Staphylococcus haemolyticu... [more]
EFTS_PHOPR4.184e-1545.45Elongation factor Ts OS=Photobacterium profundum G... [more]
EFTS_OCEIH4.184e-1548.19Elongation factor Ts OS=Oceanobacillus iheyensis G... [more]
EFTS_EXISA4.184e-1549.40Elongation factor Ts OS=Exiguobacterium sp. (strai... [more]
EFTS_SILPO5.464e-1549.40Elongation factor Ts OS=Silicibacter pomeroyi GN=t... [more]
EFTS_RHOPT5.464e-1548.31Elongation factor Ts OS=Rhodopseudomonas palustris... [more]
EFTS_RHOPA5.464e-1548.31Elongation factor Ts OS=Rhodopseudomonas palustris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182008 ID=CN182008; Name=CN182008; organism=Citrus sinensis; type=EST; length=689bp
GAGGCTCTTCGGTAGTCATCAGTATCAACACCAGCCGTCGGTCCTTACTT
TTACCTCCGGTTATTCAATAGCATAAAGGGTACTGGAATGGCCTGTTTTC
GAAGTGCAAAGCATCCATTTAGGATTTTCTTCTACAACAGACTCATTGCT
GCCACAAACAGTAAAAATGGATACTCTACTTGTGCAAGCAAAGGGACTCC
GGTTTATCAAGCTAGGCAGATCAAGGACTTATTCTCATTCAAATACCTGA
ACCCAAAATCCTCTTTTGCTTTAATTTCAAGAAACTTCAGTGATCAAGCT
CCTGCGGCTACGGAGCAAGTGAATCTCATTAAGCAGTTAAGGGAACAAAC
AAGTGCTCCAATGAAGGATGTCAAGTTGGCTCTTGTTGATTGCGATTGGG
ATATTGAGGCTGCACTGAAGGAATTGAGGAAACGAGGGAAAGTTCTGGCG
TCAAAGAAGTCGTCTCGAACTGCCACTGAGGGCTTACTTGCTTTAGCGCA
GAATGAGAGCAAGGCTGCTGTTATTGAGCTTAATTGTGAGACCGATTTTG
TTTCCAGGAATGAGATATTTCAGTACTTGGCCTTAGCTTTGGCAAAGCAA
GCTTTGGTGGCTGAGAATGTTTCACAGCCAGTATCTGGGCTCTTTCCTGT
TGGTCCTGAGTATTTGGAGGGCTTGAAGTTGAATCTTGA
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