CX300703

Overview
NameCX300703
Unique NameCX300703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEF5 (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rraA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.631e-19
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW G+V+ GCIRDVD I   D+GV+ALASHPMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   79 LAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPMKTDKRGIGDLNVAVTFAGVTFRPGEYVYADNNGVIVSPSPLKM 161          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_HALHL (Regulator of ribonuclease activity A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rraA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.631e-19
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    8 RIRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            R+    + NGW+G ++ GC+RD  E+   D GV+AL +HP+K+ KKG+GE+ V +T  G  I  G+WLYAD DG++++  EL++
Sbjct:   81 RLAELGRENGWSGAIIYGCVRDSAELAQIDFGVQALNTHPLKSQKKGLGERDVSVTFAGVTIQSGDWLYADEDGVVVASRELTL 164          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEP1 (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rraA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW G+V+ GC+RDVD +   D+GV+ALASHPMK +K+GIG+ +V +T  G     GE++YAD +G+L+S + L +
Sbjct:   79 LAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVTFAGVTFRPGEYVYADNNGVLVSPSPLKM 161          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEE4 (Regulator of ribonuclease activity A OS=Pseudomonas entomophila (strain L48) GN=rraA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.254e-18
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW G+V+ GC+RDVD +   D+GV+ALASHPMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   79 LAEKAAKNGWEGLVIYGCVRDVDVLVQTDVGVQALASHPMKTDKRGIGDLNVAVTFAGVTFRPGEYVYADNNGVIVSPSPLKM 161          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPK (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain KT2440) GN=rraA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.638e-18
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW G+V+ GC+RDVD +   D+GV+ALASHPMK +K+GIG+ +V +T  G     GE++YAD +G+L+S   L +
Sbjct:   79 LAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVTFAGVTFRPGEYVYADNNGVLVSPKPLKM 161          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_HAHCH (Regulator of ribonuclease activity A OS=Hahella chejuensis (strain KCTC 2396) GN=rraA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW GI++ GCIRDVD I   D+GV+AL +HPMK +K+GIG+ +  IT GG     G ++YAD +G+++S   LS+
Sbjct:   78 LAEKAAANGWEGIIIYGCIRDVDVIRQTDLGVQALGTHPMKTDKRGIGDLNADITFGGVTFKPGHYVYADNNGVIVSPEPLSM 160          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPG (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.650e-18
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW G+V+ GC+RDVD +   D+GV+ALASHPMK +K+GIG+ +V +   G     GE++YAD +G+L+S + L +
Sbjct:   79 LAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVAFAGVTFRPGEYVYADNNGVLVSPSPLEM 161          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSE14 (Regulator of ribonuclease activity A OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rraA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.650e-18
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  +GW G+++ GCIRDVD I   D+GV+ALASHP K  K+GIG+ +V +T GG     GE+LYAD +G++IS + L++
Sbjct:   80 LAEKAARSGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGIGDLNVLVTFGGVTFRPGEYLYADNNGVIISPSPLTM 162          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURXL (Regulator of ribonuclease activity A OS=Burkholderia xenovorans (strain LB400) GN=rraA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.650e-18
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 253
            AQ NGWAGIV+NGC+RD  E+N  ++G+ ALA+ P +  K G GE+ V + + G  +  GEW+YAD+DG+L++ A L
Sbjct:   87 AQQNGWAGIVLNGCVRDTLELNEVNVGIAALATCPRRGQKLGTGERGVAVQLPGALVRPGEWIYADSDGVLVASAAL 163          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPW (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain W619) GN=rraA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.225e-18
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGW G+V+ GC+RDVD +    +GV+ALASHPMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   79 LAEKAAKNGWEGLVIYGCVRDVDVLIQTSVGVQALASHPMKTDKRGIGDLNVAVTFAGVTFRPGEYVYADNNGVIVSPSPLEM 161          
The following BLAST results are available for this feature:
BLAST of CX300703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RRAA_PSEF55.631e-1948.19Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_HALHL5.631e-1944.05Regulator of ribonuclease activity A OS=Halorhodos... [more]
RRAA_PSEP19.605e-1946.99Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEE41.254e-1845.78Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEPK1.638e-1846.99Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_HAHCH2.140e-1846.99Regulator of ribonuclease activity A OS=Hahella ch... [more]
RRAA_PSEPG3.650e-1845.78Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSE143.650e-1848.19Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_BURXL3.650e-1849.35Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_PSEPW6.225e-1844.58Regulator of ribonuclease activity A OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC08001C12SK PhyRootSw1 Citrus sinensis cDNA clone C08001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300703 ID=CX300703; Name=CX300703; organism=Citrus sinensis; type=EST; length=401bp
CTCGTGCCGAATTCGGCACGAGGCCCAGAATAACGGATGGGCTGGAATAG
TTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGGGTGTGATATT
GGTGTGAGAGCACTGGCTTCTCATCCCATGAAAGCCAATAAGAAGGGGAT
TGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGAATCAGTGATG
GCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTCTCGGGCAGAG
TTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTGCAGGTGCTTT
TCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTTTCCCGAGCCC
ATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAATCTATCCGAC
T
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