CN181991

Overview
NameCN181991
Unique NameCN181991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181991 vs. ExPASy Swiss-Prot
Match: MSSP3_ARATH (Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 33/116 (28.45%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  308 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSP 655
            V+ +A +A IG +L G+D   I+GA++YI+ +F  ++++  ++  IV+M++            ++D+ GRR+ ++++  L+F+ +++M  +PN   L+  R+  G G+G+A    P
Sbjct:    4 VVLVALAAAIGNMLQGWDNATIAGAVIYIKKEFH-LEKEPKIEGLIVAMSLIGATLITTFSGPVSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVP 118          
BLAST of CN181991 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  296 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM-AVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSP 655
            ++ Y    A  A +  ++ GYD GV+SGA ++I+DD K  D +  +   I+++ ++           W+    GRR +I++A   FF GA++M  A N   ++ GR   G+GVG A M +P
Sbjct:   22 RSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWL----GRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAP 138          
The following BLAST results are available for this feature:
BLAST of CN181991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
MSSP3_ARATH5.737e-1128.45Monosaccharide-sensing protein 3 OS=Arabidopsis th... [more]
PLT1_ARATH7.492e-1132.23Putative polyol transporter 1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181991 ID=CN181991; Name=CN181991; organism=Citrus sinensis; type=EST; length=656bp
GAGGCTTTCCTTCACTCACTTTCTTTCTCCCCCACCCCCAGTCCATTTTC
CCGGAAAATTTACTCACTATCACTATCATCATCATCACTCCCTTATATAG
TTATTTATAGTCCAAGTCCAACCACACCAAACCATTTTCTTGCCAAAATA
AAGAAAACAAACTCCTAAATTGTATATCTTTTAACAGATATTAATTTGTA
AAAAAAAAAAAAAAGGCCTGAAAATGGAGGGAGCAGTACATGGAGGAGGG
ACGACAGATGCGTCAGCGTTTCGAGAATGCTTCTCTTTGTCTTGGAAAAA
TCCCTACGTTCTTCGACTTGCTTTCTCTGCTGGAATTGGCGGCCTTCTCT
TTGGCTACGACACTGGAGTCATATCAGGCGCGCTACTTTATATCAGAGAT
GACTTCAAATCCGTCGATAGAAAGACTTTACTGCAGGAAAGCATAGTTAG
CATGGCTGTTGCTGGAGCAATCATTGGAGCTGCAATCGGTGGATGGATGA
ATGATCGCTTTGGAAGGAGAACTTCAATCCTTGTTGCAGATTTCCTGTTC
TTCGTTGGTGCTGTGATCATGGCTGCTGCTCCTAACCCTGGTGCCCTTAT
CACTGGACGAGTATTTGTAGGACTTGGTGTGGGAATGGCATCAATGACAT
CCCCGC
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