FC921837
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.049e-14 Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD TG Q K K YT
Sbjct: 280 GPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQAKAKPNAPAYT 328 HSP 2 Score: 28.4906 bits (62), Expect = 1.049e-14 Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRENA 73
++GP+D H+ + L+ + + VR+NA
Sbjct: 255 HIGPIDGHSFDHLLPVLRNVRDNA 278
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.049e-14 Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
GP LIH VT+KGKGY PAEAAAD+ HGV KFD TG+Q K K+ Y
Sbjct: 275 GPCLIHVVTQKGKGYAPAEAAADKYHGVQKFDVITGEQVKAKAAAPAY 322 HSP 2 Score: 32.7278 bits (73), Expect = 1.049e-14 Identity = 12/33 (36.36%), Postives = 21/33 (63.64%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRENAYARASSDPC 100
Y+GP+D HN++ L+ + + VR+ A+ PC
Sbjct: 250 YVGPIDGHNIDQLIPVLENVRD-----AAEGPC 277
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.362e-14 Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
GP+L+H VT+KGKGYPPAEAAAD+ H VVKFD TG Q K+K +Y
Sbjct: 300 GPILVHVVTQKGKGYPPAEAAADKYHAVVKFDISTGAQSKSKPNAPSY 347 HSP 2 Score: 28.8758 bits (63), Expect = 1.362e-14 Identity = 9/22 (40.91%), Postives = 17/22 (77.27%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRE 67
Y+GP+D HN++ L+ + + VR+
Sbjct: 275 YVGPIDGHNLDHLLPVLKNVRD 296
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.771e-14 Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD TG Q + K +YT
Sbjct: 275 GPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQARVKPNAPSYT 323 HSP 2 Score: 28.4906 bits (62), Expect = 1.771e-14 Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRENA 73
++GP+D H+ + L+ + + VR+NA
Sbjct: 250 HIGPIDGHSFDHLLPVLRNVRDNA 273
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.771e-14 Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD TG Q + K +YT
Sbjct: 275 GPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQARVKPNAPSYT 323 HSP 2 Score: 28.4906 bits (62), Expect = 1.771e-14 Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRENA 73
++GP+D H+ + L+ + + VR+NA
Sbjct: 250 HIGPIDGHSFDHLLPVLRNVRDNA 273
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.771e-14 Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD TG Q + K +YT
Sbjct: 275 GPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQARVKPNAPSYT 323 HSP 2 Score: 28.4906 bits (62), Expect = 1.771e-14 Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRENA 73
++GP+D H+ + L+ + + VR+NA
Sbjct: 250 HIGPIDGHSFDHLLPVLRNVRDNA 273
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.300e-14 Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 3
Query: 42 LPSFRE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
LP + M T GP+L+H VT+KGKGYPPAEA+AD+ H VVKFD TG Q K K Y
Sbjct: 264 LPVLKNVRDMET-GPILVHVVTQKGKGYPPAEASADKYHAVVKFDVATGTQAKAKPNAPAY 323 HSP 2 Score: 28.8758 bits (63), Expect = 2.300e-14 Identity = 9/22 (40.91%), Postives = 17/22 (77.27%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRE 67
Y+GP+D HN++ L+ + + VR+
Sbjct: 251 YVGPIDGHNLDHLLPVLKNVRD 272
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 2.989e-14 Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
GP LIH VT+KGKGY PAEAAAD+ H VVKFD TG Q K KS +Y
Sbjct: 276 GPFLIHVVTQKGKGYGPAEAAADKYHAVVKFDIATGAQAKAKSNAPSY 323 HSP 2 Score: 31.187 bits (69), Expect = 2.989e-14 Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRE 67
Y+GPVD HN++ L+ I Q VR+
Sbjct: 251 YVGPVDGHNLDHLLPILQNVRD 272
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 2.989e-14 Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
GP LIH VT+KGKGY PAEAAAD+ H VVKFD TG Q K KS +Y
Sbjct: 276 GPFLIHVVTQKGKGYGPAEAAADKYHAVVKFDIATGAQAKAKSNAPSY 323 HSP 2 Score: 31.187 bits (69), Expect = 2.989e-14 Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRE 67
Y+GPVD HN++ L+ I Q VR+
Sbjct: 251 YVGPVDGHNLDHLLPILQNVRD 272
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.989e-14 Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3
Query: 81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
GPVLIH VT+KGKGY PAEAAAD+ HGV KFD TGKQ K + +YT
Sbjct: 274 GPVLIHVVTQKGKGYAPAEAAADKYHGVNKFDVITGKQSKPPANAPSYT 322 HSP 2 Score: 29.261 bits (64), Expect = 2.989e-14 Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 2
Query: 2 YLGPVDRHNVEDLVTIFQRVRE 67
Y+GP+D HN++ L+ I + VR+
Sbjct: 249 YVGPIDGHNLDHLLPILKNVRD 270 The following BLAST results are available for this feature:
BLAST of FC921837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921837 ID=FC921837; Name=FC921837; organism=Citrus sinensis; type=EST; length=229bpback to top |