FC921837 | Citrus Genome Database

Overview


Name	FC921837
Unique Name	FC921837
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	229

Libraries


Library Name	Type
RindPdigS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.883e-14
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVL+H VT KGKGY PAE +AD+ HGV +FD  TGKQ K +S  L+YT
Sbjct:  275 GPVLVHVVTHKGKGYAPAEESADKYHGVNRFDVVTGKQVKAQSTRLSYT 323

HSP 2 Score: 28.4906 bits (62), Expect = 3.883e-14
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GP+D HN E L+ + + VR
Sbjct:  250 YVGPIDGHNFEHLLPVLKNVR 270

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.044e-14
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD  TG Q + K    +YT
Sbjct:  275 GPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQARVKPNAPSYT 323

HSP 2 Score: 26.9498 bits (58), Expect = 5.044e-14
Identity = 8/23 (34.78%), Postives = 17/23 (73.91%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVREN 70
            ++GP+D H+ + L+ + + VR+N
Sbjct:  250 HIGPIDGHSFDHLLPVLRNVRDN 272

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.552e-14
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFK 200
            GPVLIHAVT+KGKGY PAEAAAD+ HGV KFD  TG+Q K
Sbjct:  275 GPVLIHAVTKKGKGYAPAEAAADKYHGVQKFDVITGEQAK 314

HSP 2 Score: 30.8018 bits (68), Expect = 6.552e-14
Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVREN 70
            Y+GP+D HN++ L+ I + VR++
Sbjct:  250 YVGPIDGHNLDHLIPILENVRDS 272

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 6.552e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
            GP LIH VT+KGKGY PAEAA+D+ H VVKFD  TG Q K KS   +Y
Sbjct:  276 GPFLIHVVTQKGKGYGPAEAASDKYHAVVKFDIATGAQAKAKSNAPSY 323

HSP 2 Score: 31.187 bits (69), Expect = 6.552e-14
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GPVD HN++ L+ I Q VR+
Sbjct:  251 YVGPVDGHNLDHLLPILQNVRD 272

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.553e-14
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGY PAEAAAD+ HGV KFD  TG Q K K    +YT
Sbjct:  275 GPVLIHVVTQKGKGYAPAEAAADKYHGVNKFDVITGAQAKVKPNAPSYT 323

HSP 2 Score: 28.4906 bits (62), Expect = 6.553e-14
Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVRENA 73
            ++GP+D H+ + L+ + + VR+NA
Sbjct:  250 HIGPIDGHSFDHLLPVLRNVRDNA 273

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.553e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
            GP LIH VT+KGKGY PAEAA+D+ H VVKFD  TG Q K KS   +Y
Sbjct:  273 GPFLIHVVTQKGKGYAPAEAASDKYHAVVKFDIATGTQAKAKSNAPSY 320

HSP 2 Score: 30.8018 bits (68), Expect = 6.553e-14
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ I Q VR+
Sbjct:  248 YVGPIDGHNLDHLLPILQNVRD 269

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.553e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
            GP LIH VT+KGKGY PAEAA+D+ H VVKFD  TG Q K KS   +Y
Sbjct:  273 GPFLIHVVTQKGKGYAPAEAASDKYHAVVKFDIATGTQAKAKSNAPSY 320

HSP 2 Score: 30.8018 bits (68), Expect = 6.553e-14
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ I Q VR+
Sbjct:  248 YVGPIDGHNLDHLLPILQNVRD 269

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.864e-13
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
            GP+L+H VT+KGKGY PAEAAAD+ H VVKFD  TG Q K+K     Y
Sbjct:  302 GPILLHVVTQKGKGYGPAEAAADKYHAVVKFDVSTGAQSKSKPNAPAY 349

HSP 2 Score: 28.8758 bits (63), Expect = 1.864e-13
Identity = 9/22 (40.91%), Postives = 17/22 (77.27%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ + + VR+
Sbjct:  277 YVGPIDGHNLDHLLPVLKNVRD 298

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.866e-13
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGY PAEAAAD+ HGV KFD  TG Q K K    +YT
Sbjct:  275 GPVLIHVVTQKGKGYAPAEAAADKYHGVNKFDVITGAQAKAKPNAPSYT 323

HSP 2 Score: 26.9498 bits (58), Expect = 1.866e-13
Identity = 8/23 (34.78%), Postives = 17/23 (73.91%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVREN 70
            ++GP+D H+ + L+ + + VR+N
Sbjct:  250 HIGPIDGHSFDHLLPVLRNVRDN 272

[Close]

BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.147e-13
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 3

Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGY PAEA+ D+ HGV KF+  TG+Q K+K+   +YT
Sbjct:  273 GPVLIHVVTQKGKGYAPAEASDDKYHGVAKFNVITGEQQKSKAAAPSYT 321

HSP 2 Score: 28.4906 bits (62), Expect = 3.147e-13
Identity = 9/22 (40.91%), Postives = 17/22 (77.27%), Query Frame = 2

Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D H+++ LV + + VR+
Sbjct:  248 YVGPIDGHDLDQLVPVLRNVRD 269

The following BLAST results are available for this feature:

BLAST of FC921837 vs. ExPASy Swiss-Prot

BLAST of FC921837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64


Match Name	E-value	Identity	Description
DXS_BARBK	3.883e-14	63.27	1-deoxy-D-xylulose-5-phosphate synthase OS=Bartone...	[more]
DXS_RHIL3	5.044e-14	67.35	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi...	[more]
DXS_SPHAL	6.552e-14	77.50	1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo...	[more]
DXS_RHOPB	6.552e-14	64.58	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops...	[more]
DXS_AGRRK	6.553e-14	67.35	1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac...	[more]
DXS_RHOPS	6.553e-14	64.58	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops...	[more]
DXS_RHOP2	6.553e-14	64.58	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops...	[more]
DXS_NITHX	1.864e-13	62.50	1-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba...	[more]
DXS_AGRT5	1.866e-13	67.35	1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac...	[more]
DXS_MARMM	3.147e-13	61.22	1-deoxy-D-xylulose-5-phosphate synthase OS=Maricau...	[more]

Pages

Properties


Property Name	Value
Genbank description	C06053A02T7 RindPdigS Citrus sinensis cDNA clone C06053A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921837 ID=FC921837; Name=FC921837; organism=Citrus sinensis; type=EST; length=229bp
CTACCTTGGTCCAGTGGATAGACACAATGTCGAAGATTTAGTTACCATCT
TTCAGAGAGTGAGAGAAAATGCCTACGCCAGGGCCAGTTCTGATCCATGC
TGTAACAGAGAAGGGAAAGGGCTATCCCCCAGCGGAGGCAGCAGCTGATA
GAATGCATGGAGTTGTCAAGTTCGATCCAAAAACTGGCAAGCAATTTAAG
ACCAAATCCCCTACGCTCACGTATACACA