FC921837

Overview
NameFC921837
Unique NameFC921837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.304e-12
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 3
Query:   75 TPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            T GPVLIH VT+KGKGY PAE A D+ HGV KFDP TG+Q K+ +    YT
Sbjct:  276 TTGPVLIHVVTKKGKGYAPAENAPDKYHGVNKFDPVTGEQKKSVANAPNYT 326          

HSP 2 Score: 23.483 bits (49), Expect = 3.304e-12
Identity = 8/21 (38.10%), Postives = 14/21 (66.67%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GP+D H++E L+   +  R
Sbjct:  253 YVGPIDGHDMEALLQTLRAAR 273          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.233e-12
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 3
Query:   42 LPSFRE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            LP  +        GP+L+H VT+KGKGY PA AA+D+ H V  FD  TG Q K K+   +YT
Sbjct:  263 LPVLKNVRDFKETGPILVHVVTQKGKGYAPAAAASDKYHSVNTFDVVTGVQTKPKANAPSYT 324          

HSP 2 Score: 28.8758 bits (63), Expect = 7.233e-12
Identity = 9/22 (40.91%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ + + VR+
Sbjct:  250 YVGPIDGHNLDHLLPVLKNVRD 271          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.234e-12
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 3
Query:   66 KMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            K    GPVLIHAVT KGKGY PAE + D  HGV KFD  TG+Q K+     +YT
Sbjct:  269 KARATGPVLIHAVTVKGKGYSPAELSDDCYHGVAKFDVATGQQKKSAPNAPSYT 322          

HSP 2 Score: 28.1054 bits (61), Expect = 7.234e-12
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRENA 73
            Y+GPVD H++E+L+T  +  +  A
Sbjct:  249 YIGPVDGHDMEELLTTLRAAKARA 272          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.391e-12
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 3
Query:   84 PVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            PVL+H VT+KGKGY PAE AAD++H VVKFD  TG+Q K      +YT
Sbjct:  274 PVLVHCVTQKGKGYAPAEGAADKLHAVVKFDVVTGQQQKAAGGPPSYT 321          

HSP 2 Score: 25.409 bits (54), Expect = 9.391e-12
Identity = 7/21 (33.33%), Postives = 16/21 (76.19%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GP+D H+++ LV++ +  +
Sbjct:  248 YIGPIDGHDMDALVSVLKNAK 268          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.391e-12
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 3
Query:   84 PVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            PVL+H VT+KGKGY PAE AAD++H VVKFD  TG+Q K      +YT
Sbjct:  274 PVLVHCVTQKGKGYAPAEGAADKLHAVVKFDVVTGQQQKAAGGPPSYT 321          

HSP 2 Score: 25.409 bits (54), Expect = 9.391e-12
Identity = 7/21 (33.33%), Postives = 16/21 (76.19%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GP+D H+++ LV++ +  +
Sbjct:  248 YIGPIDGHDMDALVSVLKNAK 268          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.219e-11
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 3
Query:   66 KMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            K    GP+LIHAVT+KGKGY PAE A D+ H   KFD  TG+Q K  S   +YT
Sbjct:  274 KARAAGPILIHAVTKKGKGYRPAEVARDKGHATAKFDMVTGEQKKAPSNAPSYT 327          

HSP 2 Score: 26.5646 bits (57), Expect = 1.219e-11
Identity = 8/24 (33.33%), Postives = 17/24 (70.83%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRENA 73
            Y+GP+D H+++ L+ + + V+  A
Sbjct:  254 YIGPIDGHDMDQLLPVLRTVKARA 277          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.054e-11
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH  T KGKGY PAE A D++HGV KFD +TGKQ K+      YT
Sbjct:  276 GPVLIHVCTTKGKGYAPAEGAEDKLHGVSKFDIETGKQKKSIPNAPNYT 324          

HSP 2 Score: 25.0238 bits (53), Expect = 2.054e-11
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRENA 73
            Y+GPVD H++ +LV   +  R  A
Sbjct:  251 YIGPVDGHDMAELVETLRVTRARA 274          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.666e-11
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 3
Query:   66 KMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            K    GPVLIH  T KGKGY PAE +AD+ HGV KFD  TG Q K K+   +YT
Sbjct:  272 KARATGPVLIHCCTVKGKGYAPAEGSADKYHGVSKFDVGTGVQAKAKANAPSYT 325          

HSP 2 Score: 24.2534 bits (51), Expect = 2.666e-11
Identity = 7/24 (29.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRENA 73
            Y+GP+D H++  L+++ +  +  A
Sbjct:  252 YIGPIDGHDMAQLLSVLRGAKARA 275          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.461e-11
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 3
Query:   66 KMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            K    GP++IHA+T+KGKGY PAE A D+ H   KFD  TG+Q K  S   +YT
Sbjct:  274 KARATGPIMIHALTKKGKGYAPAETARDKGHATAKFDVLTGQQTKAPSNAPSYT 327          

HSP 2 Score: 26.1794 bits (56), Expect = 3.461e-11
Identity = 8/24 (33.33%), Postives = 17/24 (70.83%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRENA 73
            Y+GP+D H+++ L+ + + V+  A
Sbjct:  254 YIGPIDGHDLDQLLPLLRTVKARA 277          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 4.491e-11
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GP+L+H VT KG+GY PAEAA D+ H V + D  +GKQ K      +YT
Sbjct:  275 GPILVHVVTRKGQGYAPAEAAKDKYHAVQRLDVVSGKQAKAPPGPPSYT 323          

HSP 2 Score: 30.8018 bits (68), Expect = 4.491e-11
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GPVD HN++ L+ + + VR+
Sbjct:  250 YVGPVDGHNLDQLIPVLENVRD 271          
The following BLAST results are available for this feature:
BLAST of FC921837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
DXS1_RHOS43.304e-1262.751-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_BEII97.233e-1246.771-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS2_JANSC7.234e-1257.411-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_CAUCR9.391e-1260.421-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN9.391e-1260.421-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_SILST1.219e-1155.561-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_RHOCA2.054e-1161.221-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS1_ROSDO2.666e-1157.411-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS2_ROSDO3.461e-1151.851-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS2_ZYMMO4.491e-1151.021-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]

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Properties
Property NameValue
Genbank descriptionC06053A02T7 RindPdigS Citrus sinensis cDNA clone C06053A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921837 ID=FC921837; Name=FC921837; organism=Citrus sinensis; type=EST; length=229bp
CTACCTTGGTCCAGTGGATAGACACAATGTCGAAGATTTAGTTACCATCT
TTCAGAGAGTGAGAGAAAATGCCTACGCCAGGGCCAGTTCTGATCCATGC
TGTAACAGAGAAGGGAAAGGGCTATCCCCCAGCGGAGGCAGCAGCTGATA
GAATGCATGGAGTTGTCAAGTTCGATCCAAAAACTGGCAAGCAATTTAAG
ACCAAATCCCCTACGCTCACGTATACACA
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