CN181987

Overview
NameCN181987
Unique NameCN181987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 8.444e-78
Identity = 140/227 (61.67%), Postives = 175/227 (77.09%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + D GKK ++     MKKYC VIR++AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGK
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.881e-77
Identity = 139/227 (61.23%), Postives = 174/227 (76.65%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  T++A+H+++E +RRFYKNW               +  DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLME+QVNGG+VA+K+D+A    E+Q+P+  VF +DEMID+IGVTKGK
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGK 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.209e-77
Identity = 138/227 (60.79%), Postives = 171/227 (75.33%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E PP+          TPRG R   TVWA+HL+E+ R RFYKNW               + +DG+K I+A L KMKKYC+ IRV+AHTQ++ MK  ++KKAH+MEIQ+NGG+VA+KVD+A    EKQ+P+D+VF +DEMID IGVTKGK
Sbjct:    1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGK 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.542e-74
Identity = 134/226 (59.29%), Postives = 168/226 (74.34%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIETPP+          TP+G R+L T+WA+HL+EE RRRFY NW               + +DGKK I+A   K+KKYC+ IRV+AHTQ++ ++  +QKKAHL+EIQ+NGG++ QKVD+A    EKQI +D VF +DEMID IGVTKG
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKG 225          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.320e-74
Identity = 133/226 (58.85%), Postives = 168/226 (74.34%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+ETPP+          TP+G R+L T+WA+HL+EE RRRFY NW               + +DGKK I+A   K+KKYC+ IRV+AHTQ++ ++  +QKKAHL+EIQVNGG++ QKVD+A    EKQ+ +D VF +DEMID IGVT+G
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.648e-73
Identity = 134/228 (58.77%), Postives = 172/228 (75.44%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWC-XXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKFE PRHG+LGF PRKRA+RH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE PP+         +T +GL++  TVWAQHL++  RRR YKNW                ET++GKK I+A L+ +KK C+V+RV+AHTQ+ K+K L QKKAH++EIQVNGGS+ +KV+FA   FEK + +  VF ++E+ID+IGVTKGK
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGK 227          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.059e-72
Identity = 134/226 (59.29%), Postives = 168/226 (74.34%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHGSLGFLPRKR++  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++TPPL         +TPRGLRSL TVWA+HL+EEVRRRFYKNW                 D  +  ++ +L ++KKY +V+RVLAHTQI+K   L QKKAHL EIQVNGGSV+ KVD+A   FEK + +D+VF+KDEM+D+  VTKG
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKG 223          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.059e-72
Identity = 133/226 (58.85%), Postives = 170/226 (75.22%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHG LGFLPRKRA+  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++TPP+         +TPRGLRSL TVWA+HL++E++RRFYKNW                  DG   I+ +L ++KKY +V+RVLAHTQ+RK   L QKKAHL EIQ+NGGSV++KVD+A   FEK + +D+VF+++EMID+I VTKG
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQVPPPSTAQDGAA-IERELARIKKYASVVRVLAHTQVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKG 224          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 9.042e-72
Identity = 133/227 (58.59%), Postives = 162/227 (71.37%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHGS+ F P+KR++RHRGKVKAFPKDD SKP  LT F+GYKAGMTHIVR+ ++PGSK++KKE  EAVT++ETPP+         +TP GLR+L  VWAQHL+EE RRRFYKNW                 D GKK I+    KM +YC VIRV+AH+QIR +K  +QKKAH+MEIQ+NGGS+  KV +A    EK I +  VF +DEMID +GVTKGK
Sbjct:    1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIK-QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGK 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.705e-70
Identity = 131/226 (57.96%), Postives = 168/226 (74.34%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHG LGFLPRKRA+  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 +    +I+ +L ++KKY TV+RVL HTQ+RK   L QKKAHL EIQ+NGGS+++KVD+A   FEK + +D+VF+++EMID I VTKG
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQNGA--EIERELARIKKYATVVRVLVHTQVRKTP-LVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKG 223          
The following BLAST results are available for this feature:
BLAST of CN181987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_MOUSE8.444e-7861.6760S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN1.881e-7761.2360S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_TOXCA3.209e-7760.7960S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEBR2.542e-7459.2960S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_CAEEL3.320e-7458.8560S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_DICDI1.648e-7358.7760S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_DEBHA4.059e-7259.2960S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_ASHGO4.059e-7258.8560S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_DROME9.042e-7258.5960S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_CANGA1.705e-7057.9660S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181987 ID=CN181987; Name=CN181987; organism=Citrus sinensis; type=EST; length=725bp
GAGGCTTTCATCAGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTC
ATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGG
AAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGA
CCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAA
TGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAG
AAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGT
TGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCT
GCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTAC
AAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAA
GTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAA
TGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGA
AAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGT
CAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCG
AGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGAC
ATTATTGGTGTGACCAAAGGTAAGG
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