CN181987

Overview
NameCN181987
Unique NameCN181987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 264.618 bits (675), Expect = 3.799e-70
Identity = 132/226 (58.41%), Postives = 166/226 (73.45%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHG LGFLPRKRA+  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 D     I+ +L ++KKY +V+RVL HTQIRK   L QKKAHL EIQ+NGGS+++KVD+A   FEK + +D+VF+++EMID I VTKG
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKG 223          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 6.480e-70
Identity = 128/227 (56.39%), Postives = 161/227 (70.93%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ETPPL          TPRGLRS  T++A+HL++E RRRFYK+W                  DGKK +Q     MKKYC VIRV+ HTQ+ K+   +QKKAH+MEIQ+NGG+VA+KV +A    EKQ+P+ +VF + E+ID+I VTKG+
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGR 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 8.463e-70
Identity = 127/227 (55.95%), Postives = 162/227 (71.37%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ETPPL          TPRGLRS  T++A+HL++E RRRFYK+W                  DGKK +Q     MKKYC VIRV+ HTQ+ K+   +QKKAH+ME+Q+NGG+VA+KV +A    EKQ+P+ +VF ++E+ID+I VTKG+
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGR 226          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.444e-69
Identity = 128/226 (56.64%), Postives = 167/226 (73.89%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            MSHRK+E PRHG LGFLPRKRA+  RG+VK+FPKDD +KP  LT+FLGYKAGM+ IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 +  + D   +L ++KKY +V+RVL HTQ+RK   L QKKAHL EIQ+NGGSV+ KVD+A   FEK + +D+VF+++EMID++ VTKG
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAENGAQVD--RELARIKKYASVVRVLVHTQVRKTP-LSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKG 223          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.351e-40
Identity = 98/228 (42.98%), Postives = 130/228 (57.02%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRD-VEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            MS RKF  PRHGSL F PRKR+   R    AFP DD S+P  LT F+ YKAGMTH+VR   +   +K   +E  +AVT++E PP+         KT  GLR L  V A ++++ V RR + N                         ++++E +K+    +RVL  TQ   +KGL  KKAH+ EIQVNGGS+++KV++A G  EK+I I  VF  +E ID IGVTKGK
Sbjct:    1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGNRYASKESAGQFCKGSV--------CESRVEMIKERAHCVRVLVQTQPTLIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGK 220          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 88/230 (38.26%), Postives = 123/230 (53.48%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP-RGLRSLCTVWAQHLNE-EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGS-VAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            M  RK   PR GSLGF PRKRASR   +VK +P+ D  KP  L AFLGY+AGMTH+    ++PG     KE    VTI+ETPP+           P RG  SL   WAQ   E E++RR                    +TD   K ++ +L+K +     +R++A +Q +   GL +KK  L+EI+V G S V +  D+A       I ++ VF++ +++D+I VTKGK
Sbjct:    1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------------STLGSFDTDKMLKSLEERLDKAED----VRLIAASQPKLAGGLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGK 212          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 78/229 (34.06%), Postives = 114/229 (49.78%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGK-KDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            M HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+PP+            +G L  L   WA    EE   ++ K                 + D  K K+    ++K     T +R+L  TQ   +  L +K+  ++EIQ+ GGS+  ++++      KQIP+  VF++ ++ DIIGVTKGK
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGK 215          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 73/223 (32.74%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S    +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK + A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGK
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKL-----------------TLAKKEEKKTVDA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGK 204          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 74/223 (33.18%), Postives = 114/223 (51.12%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +RV+ HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGK
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRVIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGK 204          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 76/225 (33.78%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID + VTKGK
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGK 204          
The following BLAST results are available for this feature:
BLAST of CN181987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_YEAST3.799e-7058.4160S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3L_HUMAN6.480e-7056.3960S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN8.463e-7055.9560S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_KLULA1.444e-6956.6460S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_ENCCU5.351e-4042.9860S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_AERPE2.754e-2838.2650S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]
RL3_SULAC2.182e-2534.0650S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_METMP4.862e-2532.7450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM76.350e-2533.1850S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METVS8.293e-2533.7850S ribosomal protein L3P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181987 ID=CN181987; Name=CN181987; organism=Citrus sinensis; type=EST; length=725bp
GAGGCTTTCATCAGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTC
ATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGG
AAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGA
CCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAA
TGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAG
AAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGT
TGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCT
GCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTAC
AAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAA
GTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAA
TGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGA
AAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGT
CAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCG
AGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGAC
ATTATTGGTGTGACCAAAGGTAAGG
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