CN181987

Overview
NameCN181987
Unique NameCN181987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 76/225 (33.78%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID + VTKGK
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGK 204          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 73/220 (33.18%), Postives = 115/220 (52.27%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            PR GSL F PRKRA R   +++++P++D     RL AF  YKAGM+H     + P S    +E    +TI+E PP+         +  R  L +L  VWA +L++E+ R+                       + +K ++  LE +K     +RVL HT   K+  L +KK  ++EI++ G  + +++++A     KQ+ I  VFQ+ E++D IGVTKGK
Sbjct:    8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGK 205          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 69/223 (30.94%), Postives = 114/223 (51.12%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K+  PR GSL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IETPP+         KT  G++    VW+ +L++ + RR                         + D++     ++   + +RV+ +TQ   + G+ +K   +ME ++ GG+V + +D+A     K+I +  VF +  +ID+I VTKGK
Sbjct:    2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGK 201          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 73/223 (32.74%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGK
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGK 204          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 71/227 (31.28%), Postives = 113/227 (49.78%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            M HRK   PR GS G  PRKRAS      +++P    ++P +L  F+GYK GM+HI    +KP S  + KE    V++IETPP+           P+G  +  T +   ++E++ +   +                 E   GK D   ++         +RVL  TQ + +  L +KK  ++E+QV GG +  ++++      K + +  VF++ ++IDIIGVTKGK
Sbjct:    1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-------KVTRLKIDKEKMKGKLD---EINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGK 216          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 73/223 (32.74%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGK
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGK 204          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 70/221 (31.67%), Postives = 111/221 (50.23%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGK 724
            PR GS+GF PR RA+    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ETPP+          TP G R L  VW   ++E++ R                     ++ D + DI+  L+  +     +RV+ HT    +  + +K+  +ME +V GGS++ +VDFA    +   +  +  VF+  E  D+ G+TKGK
Sbjct:    7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGK 209          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 66/219 (30.14%), Postives = 109/219 (49.77%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            PR GSL F PRKRA     +++++  D+ +    +  F GYKAGMTH++   ++P S     E    VT++E PP+             G+R    +WA++L++++ R                           +DI+++++++ +    IRVLAHT  R + G+ +K   +MEI V G SV +++  A G    Q+ +  +F   E ID+  VTKGK
Sbjct:    7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGK 204          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 78/231 (33.77%), Postives = 110/231 (47.62%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY---KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV-----IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            K   PR GSL F PRKRA     ++K +PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E PPL         +   GL +   VW   LN+ V+RR     KN+                   G++D +A+L +++          +R+L HTQ   +K   +KK  +ME  + G  V  K ++A     K+I    V  + E++D+I VTKGK
Sbjct:    3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPGLT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY-------------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGK 208          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.729e-22
Identity = 75/239 (31.38%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWA----QHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    Q L+   R R + ++               + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGK
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224          
The following BLAST results are available for this feature:
BLAST of CN181987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_METVA8.293e-2533.7850S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METJA8.293e-2533.1850S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_ARCFU1.415e-2430.9450S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METM53.151e-2432.7450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_SULTO4.116e-2431.2850S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_METM64.116e-2432.7450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_NATPD9.169e-2431.6750S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METTP5.943e-2330.1450S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_THEGJ7.762e-2333.7750S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_SULIA1.729e-2231.3850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181987 ID=CN181987; Name=CN181987; organism=Citrus sinensis; type=EST; length=725bp
GAGGCTTTCATCAGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTC
ATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGG
AAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGA
CCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAA
TGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAG
AAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGT
TGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCT
GCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTAC
AAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAA
GTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAA
TGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGA
AAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGT
CAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCG
AGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGAC
ATTATTGGTGTGACCAAAGGTAAGG
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