CN181987
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.729e-22 Identity = 72/227 (31.72%), Postives = 110/227 (48.46%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMK---KYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 + PR GS+ F PRKRA+R +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E PPL KT RGL++L V A +++RR+ DD D +A +EK++ +Y +RV+ HT R + + +KK + E + G + +K ++A K + +F + +D I VTKGK Sbjct: 3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL-----------------TPPADD--YDQEAAIEKIRSNMEYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGK 205
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22 Identity = 73/237 (30.80%), Postives = 117/237 (49.37%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 M HRK PR GS G PRKR+S + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E PP+ +G ++ T W+ + ++ RR + + D+ KK + ++L+ +K I R+L TQ RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGK Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22 Identity = 73/237 (30.80%), Postives = 117/237 (49.37%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 M HRK PR GS G PRKR+S + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E PP+ +G ++ T W+ + ++ RR + + D+ KK + ++L+ +K I R+L TQ RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGK Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22 Identity = 73/237 (30.80%), Postives = 117/237 (49.37%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 M HRK PR GS G PRKR+S + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E PP+ +G ++ T W+ + ++ RR + + D+ KK + ++L+ +K I R+L TQ RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGK Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22 Identity = 73/237 (30.80%), Postives = 117/237 (49.37%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 M HRK PR GS G PRKR+S + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E PP+ +G ++ T W+ + ++ RR + + D+ KK + ++L+ +K I R+L TQ RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGK Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22 Identity = 73/237 (30.80%), Postives = 117/237 (49.37%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 M HRK PR GS G PRKR+S + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E PP+ +G ++ T W+ + ++ RR + + D+ KK + ++L+ +K I R+L TQ RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGK Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGK 224
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22 Identity = 76/235 (32.34%), Postives = 113/235 (48.09%), Query Frame = 2 Query: 38 SRMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 SR K PR GS+G PRKRA+ +V+ +P+ + KP L F YKAGM H V ++P S L+ KE +AVT+++ PPL P RS+ VWA L +RR T K D+ Q++K++++ V +R L TQ + G+ +K L+EI + G SV +++ FA K + VF +++D+I VTKGK Sbjct: 2 SRAMGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGK 214
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22 Identity = 73/228 (32.02%), Postives = 107/228 (46.93%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV-----IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 K PR GSL + PRKRA +++ +PKD R+ F GYKAGMTHI+ ++PG KE VT++E PPL + GL + VW LN+ V+RR D ++ QA+L +++ +R+L HTQ +K +KK +ME + G V K D+A K++ V + E++D+I VTKGK Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPGLT-KGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGK 208
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22 Identity = 74/227 (32.60%), Postives = 110/227 (48.46%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWA-QHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY---CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724 + PR GS+ F PRKR +R +V +P+ D + L AF GYK GMTH+ + GS E VTI+E PPL KT GL++L V A +L++E+ R+ + DI+A++E+++ IRVL HT+ K+ + +KK ++E + G SV K+++A K+I VFQ+ E D I TKGK Sbjct: 3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------------SVPKFDDIEAKIEELRNKIDDIDEIRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGK 205
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 103.219 bits (256), Expect = 1.464e-21 Identity = 70/221 (31.67%), Postives = 104/221 (47.06%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGK 724 PR GSLGF PRKR++ + ++P DD + F GYKAGMTH+V ++P S E VT+IETPP+ TP G R L VW + E+ R + D ++ I+ E +R++ HT + + +KK +ME +V GGSV+ ++D A E + ++ +F+ E D+ GVTKGK Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-------------DVPEDHDPDAAEEQIRDAHEAGD--LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGK 210 The following BLAST results are available for this feature:
BLAST of CN181987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181987 ID=CN181987; Name=CN181987; organism=Citrus sinensis; type=EST; length=725bpback to top |