CN181987

Overview
NameCN181987
Unique NameCN181987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 60/227 (26.43%), Postives = 97/227 (42.73%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 721
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIETP +         K   G  ++   W   L++++ RR                           D+ A LEK++          IR++ +T    + G+ +K   +ME  V+G  V  K ++A       + I  VF   +++D+  +T G
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTG 207          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 61/221 (27.60%), Postives = 97/221 (43.89%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIETP +         +   G +++  VWA  L+ E++RR                       D   +    + KM +   V  IR + +T  + + G+ +K   +ME  ++   +  K ++A       + I  VF+   +ID   +T GK
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-----------------PVPKGDNMAETLGNIGKMIEEGKVSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGK 208          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 55/219 (25.11%), Postives = 100/219 (45.66%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++   WA  L+ E++RR                       +G ++I   +E+ +   + IR + +T  + + G+ +K   +ME  ++   +  K ++A       + +  VF+   ++D   +T GK
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGK 208          
BLAST of CN181987 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 53/219 (24.20%), Postives = 100/219 (45.66%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGK 724
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++  VWA  L+ E++RR                       +  ++I   +E+ +   + +R + +T  + + G+ +K   +ME  ++   +  K +++       + +  VF+   ++D   +T GK
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGK 208          
The following BLAST results are available for this feature:
BLAST of CN181987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_METBU6.365e-1726.4350S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METBF1.418e-1627.6050S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METMA9.190e-1625.1150S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METAC5.957e-1524.2050S ribosomal protein L3P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181987 ID=CN181987; Name=CN181987; organism=Citrus sinensis; type=EST; length=725bp
GAGGCTTTCATCAGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTC
ATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGG
AAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGA
CCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAA
TGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAG
AAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGT
TGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCT
GCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTAC
AAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAA
GTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAA
TGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGA
AAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGT
CAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCG
AGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGAC
ATTATTGGTGTGACCAAAGGTAAGG
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