CN181986

Overview
NameCN181986
Unique NameCN181986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:77..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 5.459e-65
Identity = 115/179 (64.25%), Postives = 141/179 (78.77%), Query Frame = -2
Query:  146 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 670
            +E+ID+IGVTKGKG+ GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A  E      +  TEFD TEK I PMGGF HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  215 NELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.130e-65
Identity = 117/174 (67.24%), Postives = 139/174 (79.89%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +EMID+I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N K+Y++GK   E ++A TEFDRT+K ITPMGGF HYG VN D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  213 NEMIDVIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 9.312e-65
Identity = 114/180 (63.33%), Postives = 147/180 (81.67%), Query Frame = -2
Query:  140 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 670
            DEMID IGVTKG G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++   +  ++  TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  214 DEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 1.588e-64
Identity = 118/180 (65.56%), Postives = 144/180 (80.00%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  214 DEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.996e-63
Identity = 113/174 (64.94%), Postives = 139/174 (79.89%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +EMID++ VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GK   E+++A TEFDRT+K ITPMGGF HYG +N D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  212 NEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 8.716e-63
Identity = 112/180 (62.22%), Postives = 140/180 (77.78%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKIY++G+           ++A T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  214 NEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.650e-62
Identity = 114/174 (65.52%), Postives = 136/174 (78.16%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KIY++GK   E ++A T FDRT+K I PMGGF HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+EE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  212 NEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 236.113 bits (601), Expect = 1.259e-61
Identity = 112/174 (64.37%), Postives = 135/174 (77.59%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK   E++ A T FDRT+K ITPMGGF HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  212 NEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.259e-61
Identity = 110/179 (61.45%), Postives = 138/179 (77.09%), Query Frame = -2
Query:  149 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 667
            E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKI+++G+           ++A T +D T K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  215 EVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.783e-61
Identity = 112/174 (64.37%), Postives = 135/174 (77.59%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N KIY++G A  ++ +A T+FD TEK ITPMGGF  YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQT  E  ++ G LK
Sbjct:  212 NEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of CN181986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_DICDI5.459e-6564.2560S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_ASHGO7.130e-6567.2460S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_CAEBR9.312e-6563.3360S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_MACFA1.588e-6465.5660S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_KLULA2.996e-6364.9460S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3L_BOVIN8.716e-6362.2260S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_CANGA5.650e-6265.5260S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_YEAST1.259e-6164.3760S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3L_HUMAN1.259e-6161.4560S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3B_SCHPO4.783e-6164.3760S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181986 ID=CN181986; Name=CN181986; organism=Citrus sinensis; type=EST; length=671bp
CCTGGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCCATAGCCATAT
TAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGATGTTCAAAACT
ACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAAAATCAAGCCT
TGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTGGAACCGACCA
TGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAA
TGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAACGTCACAACAC
GCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTAATCTTCATTG
ACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGT
CCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAA
GCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTAGCCGTTCTGC
CCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCCAGGCACCAAT
ACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGGAGACGAGTAA
CACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTTGGTCACACCA
ATAATGTCAATCATCTCATCT
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