CN181986

Overview
NameCN181986
Unique NameCN181986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.783e-61
Identity = 112/174 (64.37%), Postives = 135/174 (77.59%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            +EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N KIY++G A  ++ +A T+FD TEK ITPMGGF  YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQT  E  ++ G LK
Sbjct:  212 NEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.246e-61
Identity = 109/174 (62.64%), Postives = 137/174 (78.74%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            DEMID+I VTKG G++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N K++++GK S E  +A T+FD ++K ITPMGGF  YG V  DY+++KG   G KKRV+TLR++L  QTSR A E+++LK+IDTSSKFGHG FQT +EK  + G LK
Sbjct:  213 DEMIDVIAVTKGHGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEG-NASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.392e-60
Identity = 111/174 (63.79%), Postives = 132/174 (75.86%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            DEM+D+  VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N K+Y++G A  ES S  TEFDRT+K I PMGGF  YG V  D++L+KG   G KKR+VT+R+SL   TSR A E + LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  212 DEMVDVAAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.288e-60
Identity = 109/174 (62.64%), Postives = 135/174 (77.59%), Query Frame = -2
Query:  149 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 670
            DE+ID+I VTKG G+ GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIY++GK   E  SA TE D T+K ITPMGGF  YG +N D++++KG   G KKRV+TLR+S+   TSR ALE+++LK+IDTSS+FGHG FQT  EK ++ G LK
Sbjct:  213 DEVIDVIAVTKGHGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.147e-57
Identity = 105/175 (60.00%), Postives = 135/175 (77.14%), Query Frame = -2
Query:  146 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 670
            +E ID IGVTKGKG++G V R+GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK++Y +G  S    +  TEFD TEK I+PMGGFPHYG V  D++++KG  VG +KRVVTLR+SLL+Q    A EE+ +KF+DTSSK GHGRFQT+ EK  +YG  KA
Sbjct:  208 NENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSS---NIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.017e-39
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = -2
Query:  329 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLI 670
            DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKKIYK+G+           ++  T++D ++K I P+G F HYG V  D++++
Sbjct:   11 DEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.603e-32
Identity = 68/153 (44.44%), Postives = 95/153 (62.09%), Query Frame = -2
Query:  209 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 667
            E++DI+ VTKGKG +G V RWGV     K  +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+      +     +  + +ITP GGFPHYGVV  D+++I G   G  KR++ +R ++     R   E  ++ +I   SK
Sbjct:  212 ELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGE------NGKLTLNGEKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPPAEAPQITYISRESK 358          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 63/153 (41.18%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  209 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 667
            E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+     +  +   + TE +ITP GGFPHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  217 ELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 63/153 (41.18%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  209 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 667
            E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+      +     D  E +ITP GGFPHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  214 ELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE------NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.315e-31
Identity = 63/153 (41.18%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  209 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 667
            E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+      +     D  E +ITP GGFPHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  215 ELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE------NGKLVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361          
The following BLAST results are available for this feature:
BLAST of CN181986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3A_SCHPO4.783e-6164.3760S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_ASPFU6.246e-6162.6460S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_DEBHA1.392e-6063.7960S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_NEUCR5.288e-6062.6460S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_ENCCU7.147e-5760.0060S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_PIG3.017e-3960.8360S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_THESM1.603e-3244.4450S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_PYRFU7.957e-3241.1850S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_PYRAB1.357e-3141.1850S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_PYRHO2.315e-3141.1850S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181986 ID=CN181986; Name=CN181986; organism=Citrus sinensis; type=EST; length=671bp
CCTGGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCCATAGCCATAT
TAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGATGTTCAAAACT
ACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAAAATCAAGCCT
TGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTGGAACCGACCA
TGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAA
TGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAACGTCACAACAC
GCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTAATCTTCATTG
ACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGT
CCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAA
GCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTAGCCGTTCTGC
CCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCCAGGCACCAAT
ACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGGAGACGAGTAA
CACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTTGGTCACACCA
ATAATGTCAATCATCTCATCT
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