CN181986

Overview
NameCN181986
Unique NameCN181986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:77..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667
            E++D+  +TKG G +G V RWG+    RK  R  +K  V  +G W+P R+ + V + GQ GYH RTE NK+I K+G  ++E              ITP GGF HYG++  DY+++KG   GP KR+V +R ++  +   +  +  ++ ++ T SK G
Sbjct:  197 ELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  200 EMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 667
            E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  193 EIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  200 EMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 667
            E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  193 EIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  200 EMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 667
            E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  193 EIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 62/130 (47.69%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  284 EMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 667
            +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+   E              ITP  GFPHYGVV   Y+LI+G   G +KR+V LR
Sbjct:  199 QLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  200 EMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 667
            E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR ++     +  L E+   +I   SK G+
Sbjct:  193 EFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  200 EMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 667
            E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR ++     +  L E+   +I   SK G+
Sbjct:  193 EFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  203 IDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 661
            +D I VTKGKG++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK+I K+G AS+               + P GGF  YG+V  DY++IKG   GP KR+V LR+++  + +    E  ++ +I T+SK G
Sbjct:  196 VDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADL------------VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 62/156 (39.74%), Postives = 89/156 (57.05%), Query Frame = -2
Query:  203 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 664
            ++D   +T GKG +G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK+I K+G   +E              +TP GGF +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  + +I   SK G
Sbjct:  198 LVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  284 EMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 667
            +++D+I VTKGKGY+GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK+I K+G    E              ITP  GFPHYGV+   Y+L++G   G +KR+V LR
Sbjct:  199 QLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313          
The following BLAST results are available for this feature:
BLAST of CN181986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_UNCMA7.213e-2536.9450S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METM77.213e-2540.5150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM67.213e-2540.5150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM57.213e-2540.5150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_PYRAE1.230e-2447.6950S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METVS1.230e-2441.1450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA1.230e-2441.1450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METTH1.230e-2440.6550S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_METAC3.580e-2439.7450S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_PYRCJ4.675e-2446.9250S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181986 ID=CN181986; Name=CN181986; organism=Citrus sinensis; type=EST; length=671bp
CCTGGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCCATAGCCATAT
TAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGATGTTCAAAACT
ACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAAAATCAAGCCT
TGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTGGAACCGACCA
TGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAA
TGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAACGTCACAACAC
GCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTAATCTTCATTG
ACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGT
CCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAA
GCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTAGCCGTTCTGC
CCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCCAGGCACCAAT
ACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGGAGACGAGTAA
CACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTTGGTCACACCA
ATAATGTCAATCATCTCATCT
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