CN181986

Overview
NameCN181986
Unique NameCN181986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = -2
Query:  239 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 667
            +++D+  +T G G +G V RWG+  +  K  R   LR+V  +G W PA VS+ V +AGQ GYH RT+ NK+I K+     E              + P GGF +YG+V  +Y+LIKG   GP KR++ LR+    + S +   +I
Sbjct:  197 KIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 62/154 (40.26%), Postives = 80/154 (51.95%), Query Frame = -2
Query:  203 DIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 658
            D+  +TKGKG +G V RWGV    RK  RG   R V  +G W P  V + V   GQ GYH RTE NK++ K+G+   E              ITP GGF +YG V   Y+LIKG   GP KR+V +R ++  +     + E  + FI   SK G
Sbjct:  200 DVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  275 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 667
            E  D+ G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GGF +YG V+  Y L+KG   GP KR+V  R ++
Sbjct:  198 EYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = -2
Query:  203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 667
            +  DI G+TKGKG++G V R+G+T   RK  R    R +  +G W P  V + V   GQ G+  RTE NK+I K+G+ + E              I P GGF HYG+V  +Y+LIKG   GP KR+V +R +     +R+  ++I+   ++++   SK G
Sbjct:  193 QFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = -2
Query:  203 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 664
            +ID   +T GKG +G   RWG+  +  K  R   LR++  +G +   RVS+ V + GQ GYH RTE NK+I K+G   +E              +TP GGF +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  +  I   SK G
Sbjct:  198 LIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 57/157 (36.31%), Postives = 84/157 (53.50%), Query Frame = -2
Query:  203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667
            E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +    +                TP GGFP+YG V+  Y L+KG   GP++R+V  R ++    S     E+  +++ T+S  G
Sbjct:  196 EFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 57/157 (36.31%), Postives = 84/157 (53.50%), Query Frame = -2
Query:  203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667
            E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +    +                TP GGFP+YG V+  Y L+KG   GP++R+V  R ++    S     E+  +++ T+S  G
Sbjct:  196 EFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.253e-21
Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = -2
Query:  203 DIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 658
            DI  +T GKG +G V RWGVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK+I K+G+   E              ITP GGF +YGV+   Y++IKG   GP KR++ +R ++  +     +    ++F+   SK G
Sbjct:  200 DITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = -2
Query:  284 EMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 667
            +++D+IGVTKGKG +GV+ R+GV  LPR  K  +G R+   +G   PA V +T  R GQ G+H RTE NK+I K+     E              ITP GGF HYG+V   Y+LI+G   G  KR++  R
Sbjct:  203 QLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNGSE--------------ITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFR 316          
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  203 EMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667
            ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G RKV   GA  P+      V + GQ GYH RTE NK+I K+     E              I P GGF +YG+V   YL+I+G  +G KKR + LR  +  + S +     K+ +++  S+ G
Sbjct:  205 QLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343          
The following BLAST results are available for this feature:
BLAST of CN181986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METBU4.376e-2237.2450S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METHJ7.465e-2240.2650S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_NATPD1.663e-2140.6050S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METLZ2.837e-2136.8850S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_METBF3.705e-2137.8250S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_HALSA3.705e-2136.3150S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS33.705e-2136.3150S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_METB68.253e-2137.6650S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_CALMQ1.078e-2043.0850S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_SULTO2.401e-2040.5150S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181986 ID=CN181986; Name=CN181986; organism=Citrus sinensis; type=EST; length=671bp
CCTGGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCCATAGCCATAT
TAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGATGTTCAAAACT
ACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAAAATCAAGCCT
TGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTGGAACCGACCA
TGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAA
TGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAACGTCACAACAC
GCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTAATCTTCATTG
ACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGT
CCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAA
GCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTAGCCGTTCTGC
CCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCCAGGCACCAAT
ACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGGAGACGAGTAA
CACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTTGGTCACACCA
ATAATGTCAATCATCTCATCT
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