CN181986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22 Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = -2 Query: 239 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 667 +++D+ +T G G +G V RWG+ + K R LR+V +G W PA VS+ V +AGQ GYH RT+ NK+I K+ E + P GGF +YG+V +Y+LIKG GP KR++ LR+ + S + +I Sbjct: 197 KIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22 Identity = 62/154 (40.26%), Postives = 80/154 (51.95%), Query Frame = -2 Query: 203 DIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 658 D+ +TKGKG +G V RWGV RK RG R V +G W P V + V GQ GYH RTE NK++ K+G+ E ITP GGF +YG V Y+LIKG GP KR+V +R ++ + + E + FI SK G Sbjct: 200 DVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21 Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = -2 Query: 275 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 667 E D+ G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GGF +YG V+ Y L+KG GP KR+V R ++ Sbjct: 198 EYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = -2 Query: 203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 667 + DI G+TKGKG++G V R+G+T RK R R + +G W P V + V GQ G+ RTE NK+I K+G+ + E I P GGF HYG+V +Y+LIKG GP KR+V +R + +R+ ++I+ ++++ SK G Sbjct: 193 QFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = -2 Query: 203 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 664 +ID +T GKG +G RWG+ + K R LR++ +G + RVS+ V + GQ GYH RTE NK+I K+G +E +TP GGF +YG+V DY+LIKG GP KR++ LR + + + L E + I SK G Sbjct: 198 LIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 57/157 (36.31%), Postives = 84/157 (53.50%), Query Frame = -2 Query: 203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667 E D G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ + + TP GGFP+YG V+ Y L+KG GP++R+V R ++ S E+ +++ T+S G Sbjct: 196 EFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 57/157 (36.31%), Postives = 84/157 (53.50%), Query Frame = -2 Query: 203 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667 E D G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ + + TP GGFP+YG V+ Y L+KG GP++R+V R ++ S E+ +++ T+S G Sbjct: 196 EFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.253e-21 Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = -2 Query: 203 DIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 658 DI +T GKG +G V RWGVT RK G R V +G W+P V + V ++GQ GY RTE NK+I K+G+ E ITP GGF +YGV+ Y++IKG GP KR++ +R ++ + + ++F+ SK G Sbjct: 200 DITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20 Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = -2 Query: 284 EMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 667 +++D+IGVTKGKG +GV+ R+GV LPR K +G R+ +G PA V +T R GQ G+H RTE NK+I K+ E ITP GGF HYG+V Y+LI+G G KR++ R Sbjct: 203 QLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNGSE--------------ITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFR 316
BLAST of CN181986 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20 Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = -2 Query: 203 EMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 667 ++IDIIGVTKGKG++GVV R+GV LPR K +G RKV GA P+ V + GQ GYH RTE NK+I K+ E I P GGF +YG+V YL+I+G +G KKR + LR + + S + K+ +++ S+ G Sbjct: 205 QLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343 The following BLAST results are available for this feature:
BLAST of CN181986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181986 ID=CN181986; Name=CN181986; organism=Citrus sinensis; type=EST; length=671bpback to top |