CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.735e-36
Identity = 71/150 (47.33%), Postives = 105/150 (70.00%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+CVR   +M+GY N+ E TARTIDK+GWLHT                 +KELIK+KG+QVAPAELEA+L++HPS++DAAVV++ DE A E+P A V  +  ++ +EDD+  +V   V  YK+++++ F++ IPK+ SGKI+R+ L+ K+
Sbjct:  415 EICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDLRAKL 564          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            E+ VR   +M+GY NN + T  TIDK  W+HT                 IKELIKYKGFQVAPAELE +L++HP + DA V+  PDEEAGE+P A VV +PN+  +E DI  F+A  VA YK++R + F+  +PKS +GKI+RR L  ++  KM
Sbjct:  391 EIWVRGPNMMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQQVRSKM 544          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 70/150 (46.67%), Postives = 101/150 (67.33%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R + +M+GY N+ E T  TID++GWLHT                 +KE+IKYKGFQV PAELEA+L+THP ++DAAVVS+ D+ AGE+P A +V    ++ +ED+I  FVA  V  YK++  + F D IPK+ SGKI+R+ L+ ++
Sbjct:  386 EICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARL 535          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 74/150 (49.33%), Postives = 99/150 (66.00%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R   +M+GY N+ E T  TID+ GWLHT                 +KE+IKYKGFQVAPAELEA+LLTHP++ DAAVV + DE+AGE+P A VV       +E++I  FV+  V  YK++  + FVD IPKS SGKI+R+ L+ K+
Sbjct:  388 EICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRAKI 537          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDE-EAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R Q +M+GY NN E T  TID  GWLHT                 +KE+IKY+GFQVAPAELEA+L+THPS+ DAAVV    E E GEIP A V     ++ SEDD+  FVA  V  YKK+R + FVD IPK+ SGKI+R+ L+ ++
Sbjct:  407 EICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRKQL 557          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R + +M+GY N+ E T  TIDK GWLHT                 +KE+IKYKGFQV PAELEA+L+THP ++DAAVV + DE AGE+P A +V    +  SE++I  FVA  V  YK++  + F D IPKS SGKI+R+ L+ K+
Sbjct:  396 EICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIAGEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLRAKL 545          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 73/150 (48.67%), Postives = 99/150 (66.00%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R + +M+GY NN E T +TIDK+GWLHT                 +KELIKYKGFQVAPAELEA+L+ H +V DAAVV + D+  GEIP A VV    +  ++D+I  +VA  V  YK++  + FVD IPK+ SGKI+R+ L+ K+
Sbjct:  383 EICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLRAKL 532          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 73/150 (48.67%), Postives = 99/150 (66.00%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R   +M+GY N+ E T  TID+ GWLHT                 +KE+IKYKGFQVAPAELEA+LLTHP++ DAAVV + DE+AGE+P A VV       +E++I  FV+  V  YK++  + FVD IPKS SGKI+R+ L+ ++
Sbjct:  388 EICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRARI 537          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.395e-35
Identity = 70/150 (46.67%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            E+C+R   +M+GY N+   TA TIDK+GWLHT                 +KELIKYKGFQVAPAELE++L+ HP + D AVV++ +E+AGE+P A VV + ++  SED+I  FV+  V  YK++  + F D IPK+ SGKI+R+ L+ ++
Sbjct:  401 EICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRARL 550          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.810e-34
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = -2
Query:  134 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 571
            EL ++   +M+GY++NEE T+ T+D  GWL T                 +KELIKYKG+QVAPAELEA+LLTHP + DAAV+  PD+E G+ P A VV    +  SE  IM+FVA  VA YK++R + FV  IPK+ SGKI+R+ L
Sbjct:  391 ELWLKGPSIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDL 536          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
4CL4_ARATH8.735e-3647.334-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CLL7_ARATH1.490e-3548.704-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]
4CL3_ORYSJ1.490e-3546.67Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL2_PETCR1.490e-3549.334-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_ORYSJ1.490e-3550.99Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CL4_ORYSJ2.542e-3548.67Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL5_ORYSJ3.319e-3548.67Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL1_PETCR3.319e-3548.674-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_ARATH7.395e-3546.674-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CLL5_ARATH2.810e-3449.324-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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