CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO45 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 43/149 (28.86%), Postives = 80/149 (53.69%), Query Frame = -2
Query:  125 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 571
            E+ V +  + +GY +N E TA+ + +NGW  T                  K++I Y G  V P ++E ++   P + + AVV +PD   GE P A +V N   + +E+D++ F    ++ Y K+  + FV+ +PK++ GK+ + +L+++
Sbjct:  353 EIVVHTPFLFKGYEDNPEATAKVL-QNGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEEDVIAFCKERLSAY-KIPEVEFVNELPKNNLGKVKKDVLRNQ 499          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVLGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKVLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLI (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12) GN=caiC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLC (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECODH (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12 / DH10B) GN=caiC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOBW (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12 / BW2952) GN=caiC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO7I (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 45/150 (30.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFADRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_CITK8 (Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TA+ ++ NGWLHT                    +IK  G  V+  ELE I+  HP ++D  V+ + D    E   A VV+N     +E++   F   N+A +K    L   + +P++ SGKI+++ LK
Sbjct:  368 EICIKGVPGKTIFKEYYARPEATAKALEANGWLHTGDSGYRDEEGFFYFVDRRCNMIKRGGENVSCIELENIISAHPKIQDIVVIGIHDSIRDEAIKAFVVLNEGETLTEEEFFAFCEQNMAKFKVPSFLEIRNDLPRNCSGKIIKKNLK 517          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CAIC_ECO456.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
YDAB_BACSU8.500e-1528.86Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]
CAIC_SHIDS8.500e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOLI1.450e-1430.00Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLC1.450e-1430.00Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECODH1.450e-1430.00Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOBW1.450e-1430.00Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLU1.894e-1430.00Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO7I1.894e-1430.00Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_CITK81.894e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Ci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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