CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: FADK_ECOLI (Short-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadK PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 45/152 (29.61%), Postives = 79/152 (51.97%), Query Frame = -2
Query:  110 RSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN-PNAKESEDDIMDFVA-SNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 559
            R   V  GY++  E TAR +D+ GW ++                  K++I   G  ++  E+E ILL HP + DA VV++ DE  GE   A VV+  P+   S ++++ F +   VA YK    +  ++ +P++ SGKI + +L+  ++ ++
Sbjct:  388 RGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRKDIMRRL 539          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALTI (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhi GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALSV (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALPK (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALPB (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALPA (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi A GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALNS (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella newport (strain SL254) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALEP (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALDC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella dublin (strain CT_02021853) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALA4 (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella agona (strain SL483) GN=caiC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + YY   E TAR ++  GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A +V+N     SE +   F  +N+A +K    +     +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTIFKEYYMQPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK 517          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
FADK_ECOLI2.473e-1429.61Short-chain-fatty-acid--CoA ligase OS=Escherichia ... [more]
CAIC_SALTI5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALSV5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPK5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPB5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALPA5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALNS5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALEP5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALDC5.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALA45.510e-1429.33Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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