CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSM1_MOUSE (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Mus musculus GN=Acsm1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  125 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP-----NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 418
            ++I   G+++ P E+E  L  HP+V ++AVVS PD++ GE+  A +V+NP     + ++   ++   V S  A YK  R + FV  +PK+ +GKI R+ L++K
Sbjct:  466 DVINASGYRIGPVEVENALAEHPAVAESAVVSSPDKDRGEVVKAFIVLNPEFLSHDQEQLIKELQHHVKSVTAPYKYPRKVEFVSELPKTVTGKIKRKELRNK 568          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_PYRAE (Acetyl-coenzyme A synthetase OS=Pyrobaculum aerophilum GN=acsA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            E+IK  G ++   ELE+ L++HP+V ++AVV +PD   GE+P A VV+      S++   ++ + V   +    +   + FV  +PK+ SGKIMRR+LK
Sbjct:  535 EVIKVAGHRLGTYELESALISHPAVAESAVVGVPDAIKGEVPIAFVVLKQGVAPSDELRKELREHVRRTIGPIAEPAQIFFVTKLPKTRSGKIMRRLLK 633          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_METSO (Acetyl-coenzyme A synthetase OS=Methanothrix soehngenii GN=acsA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  119 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM---NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 418
            +++   G ++A AE+E+ L+ HP + +AAVV  PDE  GE   A V++   N  + E   D + FV   +        +HFV+ +PK+ SGKIMRR++K + L
Sbjct:  547 DVLSVAGHRIANAEVESALVAHPKIAEAAVVGKPDEVKGESIVAFVILRVGNEPSPELAKDAIAFVRKTLGPVAAPTEVHFVNDLPKTRSGKIMRRVVKARAL 649          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACS2B_HUMAN (Acyl-coenzyme A synthetase ACSM2B, mitochondrial OS=Homo sapiens GN=ACSM2B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 44/151 (29.14%), Postives = 74/151 (49.01%), Query Frame = -2
Query:  125 VRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV-----MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 562
            +R   +  GY  N ++TA  I  + WL                     ++I   G+++ P+E+E  L+ HP+V + AV+S PD   GE+  A V+     ++ + ++   ++   V S  A YK  R + FV  +PK+ +GKI R  L+DK
Sbjct:  417 IRPIGIFSGYVENPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMKHPAVVETAVISSPDPVRGEVVKAFVILASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRTKLRDK 566          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_LISIN (2-succinylbenzoate--CoA ligase OS=Listeria innocua GN=menE PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 42/149 (28.19%), Postives = 74/149 (49.66%), Query Frame = -2
Query:  125 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 571
            E+ ++   +  GY +NE+ TA+    +GW  T                   +LI   G  + P E+E ++  + +VE+ AVV   D + G +P A +V+N    E    + D   +N+A++K  + +  V+ +PK+ SGKI R  LK++
Sbjct:  319 EILLKGPSITPGYLHNEKATAKAFI-DGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVIGAYEAVEEVAVVGKSDAKWGSVPVAFIVVNEGFDEGV--LKDICQTNLASFKIPKQITIVEHLPKTASGKIQRNKLKER 464          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_PYRAR (Acetyl-coenzyme A synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            E+IK  G ++   ELE+  + HP+V +AAVV +PD   GE+P A VV+      +E+   ++ + +  ++    +   + FV  +PK+ SGKIMRR+LK
Sbjct:  535 EVIKVAGHRLGTYELESAFVAHPAVAEAAVVGVPDAIKGEVPIAFVVLKQGVTPTEELRKELREHIRKSIGPIAEPAQIFFVTKLPKTRSGKIMRRLLK 633          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 42/146 (28.77%), Postives = 74/146 (50.68%), Query Frame = -2
Query:  134 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 571
            E+ V+   V +GYY   E T + + +N WLHT                   +LI   G  + P+E+E +L+    +E+A V   P+EE G +P A +V   +   SE++I   +   +A YK+ + +H V+ +P++ + K++R  L
Sbjct:  336 EILVKGPMVTKGYYKRAE-TNKEVFENNWLHTGDMGYLDEQGYLYVVDRRNDLIISGGENIYPSEIENVLVQIEGIEEAGVKGSPNEEWGMVPIAFIVC--SRPISENEIAAHLEKYLAKYKRPKEIHVVNELPRNAANKLVRHNL 478          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_BACSU (Acetyl-coenzyme A synthetase OS=Bacillus subtilis GN=acsA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = -2
Query:  131 VMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 547
            +M   +NN E+        GW  +                 + ++I   G +V P E+E+ L+ HP++ +A V+  PD   GEI  A + +    + S+   ++I  FV   +A +   R + F D +PK+ SGKIMRR+LK
Sbjct:  415 MMHTIWNNPEKYESYFMPGGWYVSGDSAYMDEEGYFWFQGRVDDVIMTSGERVGPFEVESKLVEHPAIAEAGVIGKPDPVRGEIIKAFIALREGFEPSDKLKEEIRLFVKQGLAAHAAPREIEFKDKLPKTRSGKIMRRVLK 556          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSM1_HUMAN (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Homo sapiens GN=ACSM1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = -2
Query:  110 VRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD-----IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 562
            VR   +   Y  + E+TA+ ++   + +T                   ++I   G+++ PAE+E+ L+ HP+V ++AVV  PD   GE+  A +V+ P     + D     +   V S  A YK  R + FV  +PK+ +GKI R+ L+ K   +M
Sbjct:  423 VRPVSLFMCYEGDPEKTAK-VECGDFYNTGDRGKMDEEGYICFLGRSDDIINASGYRIGPAEVESALVEHPAVAESAVVGSPDPIRGEVVKAFIVLTPQFLSHDKDQLTKELQQHVKSVTAPYKYPRKVEFVSELPKTITGKIERKELRKKETGQM 577          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_HERAR (Acetyl-coenzyme A synthetase OS=Herminiimonas arsenicoxydans GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN------PNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            +++   G ++  AE+E+ L+ +P V +AAVV  PDE  GE   A VV+         AK+   ++ D+VA  +    K + + F D +PK+ SGKIMRR+L+
Sbjct:  531 DVLNISGHRMGTAEIESALVANPMVAEAAVVGKPDETTGESICAFVVLKRVRPEGDEAKQIAKELRDWVAKEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLR 632          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
ACSM1_MOUSE3.023e-1235.92Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]
ACSA_PYRAE3.023e-1237.37Acetyl-coenzyme A synthetase OS=Pyrobaculum aeroph... [more]
ACSA_METSO3.023e-1236.89Acetyl-coenzyme A synthetase OS=Methanothrix soehn... [more]
ACS2B_HUMAN3.023e-1229.14Acyl-coenzyme A synthetase ACSM2B, mitochondrial O... [more]
MENE_LISIN5.157e-1228.192-succinylbenzoate--CoA ligase OS=Listeria innocua... [more]
ACSA_PYRAR5.157e-1236.36Acetyl-coenzyme A synthetase OS=Pyrobaculum arsena... [more]
MENE_OCEIH6.735e-1228.772-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
ACSA_BACSU6.735e-1229.58Acetyl-coenzyme A synthetase OS=Bacillus subtilis ... [more]
ACSM1_HUMAN8.796e-1228.85Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]
ACSA_HERAR8.796e-1236.27Acetyl-coenzyme A synthetase OS=Herminiimonas arse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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