CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_SYNY3 (Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain PCC 6803) GN=acsA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            ++I   G ++   E+E+ L++HP V +AAVV  PDE  GE   A V +  NA+ SE+   D++  V   +    +   + F D +PK+ SGKIMRR+L+
Sbjct:  528 DVINVSGHRLGTMEIESALVSHPLVAEAAVVGRPDELTGEAIFAFVSLEGNAEPSEELKKDLVKHVTEEIGAIARPAEIRFTDVLPKTRSGKIMRRLLR 626          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 38/148 (25.68%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  125 LCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 568
            L  R   V++ Y++++  +  +   +GW  T                  K++IK  G  ++  ELE+I + HP + DAAV++   E+  E P    V +PN++ +  ++ ++ A  VA ++      FV+ +P++ +GKI++  L++K
Sbjct:  388 LMARGHWVIKDYFHSDPGSTLS---DGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVELESIAIAHPHIVDAAVIAARHEKWDERPLLIAVKSPNSELTSGEVCNYFADKVARWQIPDAAIFVEELPRNGTGKILKNRLREK 532          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSM2_MOUSE (Acyl-coenzyme A synthetase ACSM2, mitochondrial OS=Mus musculus GN=Acsm2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 44/146 (30.14%), Postives = 70/146 (47.95%), Query Frame = -2
Query:  125 VMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD-----IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 547
            +  GY +N ++T   I  + WL                     ++I   G+++ P+E+E  L+ HP+V + AV+S PD   GE+  A VV+ P     + D     + + V S  A YK  R + FV  +PK+ +GKI R  L+ K
Sbjct:  423 MFSGYVDNPKKTQDNIRGDFWL-MGDRGIKDPEGYFHFIGRSDDIINSSGYRIGPSEVENALMEHPAVSETAVISSPDPSRGEVVKAFVVLAPEFLSHDRDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTVTGKIERAKLRAK 567          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_VIBVY (Acetyl-coenzyme A synthetase OS=Vibrio vulnificus (strain YJ016) GN=acsA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 33/99 (33.33%), Postives = 56/99 (56.57%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN---AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            +++   G ++  AE+E+ L+ HP + +AA+V +P +  G+   A V +N       E   ++ D+V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct:  519 DVLNVSGHRMGTAEIESALVAHPKIAEAAIVGIPHDIKGQAIYAYVTLNAGEYPTAELHKEVKDWVRKEIGPIATPDVLHWTDALPKTRSGKIMRRILR 617          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_VIBVU (Acetyl-coenzyme A synthetase OS=Vibrio vulnificus GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 33/99 (33.33%), Postives = 56/99 (56.57%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN---AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            +++   G ++  AE+E+ L+ HP + +AA+V +P +  G+   A V +N       E   ++ D+V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct:  519 DVLNVSGHRMGTAEIESALVAHPKIAEAAIVGIPHDIKGQAIYAYVTLNAGEYPTAELHKEVKDWVRKEIGPIATPDVLHWTDALPKTRSGKIMRRILR 617          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_THEEB (Acetyl-coenzyme A synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES---EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            ++I   G ++   E+E+ L++HP+V +AAVV  PDE  GE   A V++  +A  S   + ++   V + +    +   + F D +PK+ SGKIMRR+L+
Sbjct:  530 DVINVSGHRLGTMEIESALVSHPAVAEAAVVGKPDEVKGEEIVAFVILEGSATPSDALQQELKQHVVNEIGALARPAEIRFTDALPKTRSGKIMRRLLR 628          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_DESAA (Acetyl-coenzyme A synthetase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.366e-11
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            ++I   G ++  AE+E+ L+ HP+V +AAVV  P +  G+   A V ++   + SE+   ++  FV  ++       VL F D +PK+ SGKIMRRIL+
Sbjct:  514 DVINVSGHRLGTAEIESSLVAHPAVSEAAVVGFPHDIKGQAIYAYVTLSSGYEPSEELRKELSLFVRKDIGPIATPEVLQFTDSLPKTRSGKIMRRILR 612          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 39/149 (26.17%), Postives = 74/149 (49.66%), Query Frame = -2
Query:  125 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 571
            E+ ++   +  GY +N++ T  +   +GW  T                   +LI   G  + P E+E ++  + +V++ AV+  PD++ G +P A +V        ED++     +N+A+YK  + +  V+ +PK+ SGKI R  LK++
Sbjct:  319 EILLKGPSITPGYLHNKKATEASF-VDGWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVIGEYVAVKEVAVIGQPDDKWGSVPVAFIVAEETF--DEDELQLICQTNLASYKIPKQIIIVEKLPKTASGKIQRNKLKER 464          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: BCLA_THAAR (Benzoate--CoA ligase OS=Thauera aromatica GN=bclA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = -2
Query:  143 YYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 535
            Y+NN E+TA T     W  +                   +++K  G  V+P E+E+ L+ H +V +AAVV   DE+    P A +V+ P     E    D+   V + +A YK  R + FVD +PK+ +GKI R
Sbjct:  389 YWNNPEKTAATF-MGEWTRSGDKYLVNDEGYYVYAGRSDDMLKVSGIYVSPIEVESALIAHEAVLEAAVVGWEDEDHLIKPKAFIVLKPGYGAGEALRTDLKAHVKNLLAPYKYPRWIEFVDDLPKTATGKIQR 521          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: YHFT_BACSU (Uncharacterized acyl--CoA ligase yhfT OS=Bacillus subtilis GN=yhfT PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  113 LIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 415
            +I Y G  + P E+E +LL  P VE AAVV +PDE  GEI  A ++ N NA+     +  +    +A+YK  +   F D +P++ SGKI R  +K K LE+
Sbjct:  379 MIVYGGLNIFPEEIERVLLACPEVESAAVVGIPDEYWGEIAVAVILGNANAR----TLKAWCKQKLASYKIPKKWVFADSLPETSSGKIARSRVK-KWLEE 474          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
ACSA_SYNY31.149e-1137.37Acetyl-coenzyme A synthetase OS=Synechocystis sp. ... [more]
ALKK_PSEOL1.960e-1125.68Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
ACSM2_MOUSE2.559e-1130.14Acyl-coenzyme A synthetase ACSM2, mitochondrial OS... [more]
ACSA_VIBVY4.366e-1133.33Acetyl-coenzyme A synthetase OS=Vibrio vulnificus ... [more]
ACSA_VIBVU4.366e-1133.33Acetyl-coenzyme A synthetase OS=Vibrio vulnificus ... [more]
ACSA_THEEB4.366e-1134.34Acetyl-coenzyme A synthetase OS=Thermosynechococcu... [more]
ACSA_DESAA4.366e-1136.36Acetyl-coenzyme A synthetase OS=Desulfatibacillum ... [more]
MENE_LISMO5.702e-1126.172-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
BCLA_THAAR5.702e-1132.09Benzoate--CoA ligase OS=Thauera aromatica GN=bclA ... [more]
YHFT_BACSU7.447e-1139.60Uncharacterized acyl--CoA ligase yhfT OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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