CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSB_DICDI (Acyl-CoA synthetase short-chain family member B, mitochondrial OS=Dictyostelium discoideum GN=aslB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  113 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN----AKESEDDIMDFVASN---VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 418
            ++I   G +++   +E IL+ HP + + AV+ + DE  GEIP   VV+ P     A+E E++++  V  N   VAT+KKV     V+ +PK+ SGKI+R IL+ KM  K
Sbjct:  551 DIINVSGHRLSTGSIEEILVKHPKIVECAVIGVHDELKGEIPFGLVVLKPQYKDCAEEVENELIKEVRENIGPVATFKKVL---SVNRLPKTRSGKILRNILR-KMYNK 655          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSM5_RAT (Acyl-coenzyme A synthetase ACSM5, mitochondrial OS=Rattus norvegicus GN=Acsm5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 44/151 (29.14%), Postives = 77/151 (50.99%), Query Frame = -2
Query:  125 RSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED------DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 559
            R  C+   Y +N E+TA + ++  +  T                   ++I    +++ P E+E+ L  HP+V ++AVVS PD   GE+  A +V++P A  S D      ++ + V +  A YK  R + F+  +PK+ SGKI+R  L+++
Sbjct:  426 RPFCLFNCYLDNPEKTAAS-EQGDFYITGDRAHMDEDGYFWFVGRNDDVINSSSYRIGPVEVESALAEHPAVLESAVVSSPDPIRGEVVKAFIVLSP-AYVSHDPEALTRELQEHVKTVTAPYKYPRKVAFISELPKTVSGKILRSKLRNQ 574          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_PSYIN (Acetyl-coenzyme A synthetase OS=Psychromonas ingrahamii (strain 37) GN=acsA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            +++   G ++  AE+E+ L++HP + +AAVV +P E  G+   A V +N     S +   ++  +V   +       +LH+ +G+PK+ SGKIMRRIL+
Sbjct:  518 DVLNVSGHRMGTAEIESALVSHPKIAEAAVVGVPHEIKGQGIYAYVTLNEGEYPSPELYAEVKQWVRKEIGAIATPDILHWAEGLPKTRSGKIMRRILR 616          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSA_ENTS8 (Acetyl-coenzyme A synthetase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=acs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = -2
Query:  131 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 418
            +++   G ++  AE+E+ L++HP + +AAVV +P    G+   A V +N   + S +   ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct:  518 DVLNVSGHRLGTAEIESALVSHPKIAEAAVVGIPHSIKGQAIYAYVTLNHGEEPSAELYSEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
ACSB_DICDI7.447e-1138.53Acyl-CoA synthetase short-chain family member B, m... [more]
ACSM5_RAT9.726e-1129.14Acyl-coenzyme A synthetase ACSM5, mitochondrial OS... [more]
ACSA_PSYIN9.726e-1133.33Acetyl-coenzyme A synthetase OS=Psychromonas ingra... [more]
ACSA_ENTS89.726e-1133.33Acetyl-coenzyme A synthetase OS=Enterobacter sakaz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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