CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.009e-28
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = -2
Query:  128 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILKD 571
            E+C++   VM GYYNNE+ T   IDK+G+L T                  KELIK KGFQV PAELEA+LL+HP V DA VV L   + GE+P   VV+  N   +E +++D+    +A YK  R  + F+  IPKS +GK++R+ LKD
Sbjct:  397 EICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.756e-28
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  128 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILKD 571
            E+C++   VM GYYNNE+ T   IDK+G+  T                  KELIK KGFQV PAELEA+LL+HP V DA VV L   + GE+P   VV+  N   +E +++D+    +A YK  R  + F+  IPKS +GK++R+ LKD
Sbjct:  397 EICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.493e-27
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  128 ELCVRSQCVMQGYYNNEEETAR-------TIDKNG----WLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE-SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 571
            EL VR    M+GY NNEE TA        ++  +G    WL T                 +KELIK   +QVAPAELE +L THP + DAAV   PD+EAGEIP A VV    +    ED+++ FV + VA YKK+R + FVD IP+S SGKI+RR LK+
Sbjct:  438 ELWVRGPSTMRGYLNNEEATALALVAAAGSVSVSGGGERWLRTGDLCYVDSRGLVYVVDRVKELIKCNAYQVAPAELEDVLATHPDIHDAAVAPYPDKEAGEIPMAYVVKKQGSGHLQEDEVISFVQNKVAPYKKIRKVVFVDSIPRSPSGKILRRQLKN 597          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.264e-26
Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = -2
Query:  128 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 571
            EL +    +M+GY +++++      K+GWL T                 +K+ IKYKGFQ+AP +LE +L+ HP + D AV S  DEEAGEIP A VV    +  S   +M++VA  VA YK+VR + FV+ IPKS +GK++RR+L++
Sbjct:  428 ELWLHGPGIMKGYLSDDDDACTR--KDGWLRTGDIAYFDLDGYLYIVGRLKDTIKYKGFQIAPGDLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSCKQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRRLLRN 573          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  128 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 571
            EL V+   VM+GYY    ET   + K+GWL+T                  K++I   G+ V P E+E +L +HP V++A V+ +PD ++GE     VV    +  +E+DIM     ++A YK+   + F+D IPK+ +GK++RR L+D
Sbjct:  364 ELIVKGPNVMKGYYKMPMETEHAL-KDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPK-RSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALRD 509          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_RAT (Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = -2
Query:  107 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 571
            ELC+R  CVMQGY+   ++T  T+ ++ W  T                  K++I   G  + PAELE     HP V++A VV + D+  GE   AC+ +      +E++I  F    ++ +K  R + FV+G P + SGKI +  L+++M + ++
Sbjct:  460 ELCIRGYCVMQGYWGEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRLKSGETTTEEEIKAFCKGKISHFKIPRYIVFVEGYPLTVSGKIQKFKLREQMEQHLK 614          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            ELCVR   VM GY+   + T   I KNGWLHT                  K++I   GF V P E+E +++ HP V++ A V +P   +GE      V+  +   +E+ ++ F    +  YK  +++ F D +PKS+ GKI+RR L+D+   K+
Sbjct:  406 ELCVRGPQVMLGYWQRPDATDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGE-AVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_BACCQ (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain Q1) GN=menE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 52/154 (33.77%), Postives = 90/154 (58.44%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            E+ V+   V  GY+N E+ T  TI +NGWLHT                   +LI   G  + PA++E +LL+HP+V +A VV + D++ G++PAA VV   + + +E++I+ F    +A YK  +   F++ +P++ S K++RR L+ +++E+M
Sbjct:  332 EIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFVV--KSGEVTEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELR-QLVEEM 481          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_BACC7 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH187) GN=menE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 52/154 (33.77%), Postives = 90/154 (58.44%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            E+ V+   V  GY+N E+ T  TI +NGWLHT                   +LI   G  + PA++E +LL+HP+V +A VV + D++ G++PAA VV   + + +E++I+ F    +A YK  +   F++ +P++ S K++RR L+ +++E+M
Sbjct:  332 EIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFVV--KSGEVTEEEIIHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELR-QLVEEM 481          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            ELCV+   VM GY+   + T   I KNGWLHT                  K++I   GF V P E+E +++ HP V++ A V +P   +GE      V+  +   +E+ ++ F    +  YK  +++ F D +PKS+ GKI+RR L+D+   K+
Sbjct:  406 ELCVKGPQVMLGYWQRPDATDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGE-AVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
4CL1_DICDI3.009e-2844.30Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
4CL2_DICDI8.756e-2843.62Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
4CLL8_ORYSJ1.493e-2745.63Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CLL3_ORYSJ1.264e-2641.224-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
LCFB_BACSU2.553e-1935.14Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
ACSF2_RAT5.688e-1930.97Acyl-CoA synthetase family member 2, mitochondrial... [more]
LCFA_ECO579.703e-1933.77Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
MENE_BACCQ1.655e-1833.772-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACC72.162e-1833.772-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
LCFA_ECOLI2.162e-1833.12Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
back to top