CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = -2
Query:  107 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 571
            EL +R  CVMQGY+   ++T  T+ ++ W  T                  K++I   G  + PAELE   L HP V++A VV + DE  GE   AC+ +      + ++I  F    ++ +K  R + FV+G P + SGKI +  L+++M + ++
Sbjct:  460 ELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETTTAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQHLK 614          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_BACC1 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 10987) GN=menE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 51/154 (33.12%), Postives = 90/154 (58.44%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            E+ V+   V  GY+N E+ T  TI +NGWLHT                   +LI   G  + PA++E +LL+HP+V +A VV + D++ G++P A VV   + + +E++I+ F  + +A YK  +   F++ +P++ S K++RR L+ +++E+M
Sbjct:  332 EIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPVAFVV--KSGEVTEEEIIHFCEAKLAKYKVPKKACFLEELPRNASKKLLRRELR-QLVEEM 481          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = -2
Query:  116 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 571
            ELC R   VM+GYY +++ T + I+ +GWL T                 +K+++   G  + P E+E  L  HP+V D  VV +PD + GE  AA + +      S D++  +    +A +K  R + F D  P + SGKI +  L++K +E
Sbjct:  390 ELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEAAAWIKLKDGKSVSPDELKAYCKGKIARHKIPRYVIFTDDYPMTASGKIQKYKLREKTIE 541          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = -2
Query:  188 CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLH 550
            C + GY N++++      K+GWL T                 +K+ IKYKGFQ+APA+LEA+L+ HP + D AV S  DEEAGEIP A VV    +  S   +M++VA  V T +     H
Sbjct:  414 CFVTGYLNDDDDAFTR--KDGWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGFQIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVVRKSGSTLSCTHVMEYVAKQVRTRRSYTTQH 532          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_BACP2 (2-succinylbenzoate--CoA ligase OS=Bacillus pumilus (strain SAFR-032) GN=menE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = -2
Query:  125 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 571
            E+ V+   VM+GY   EE TA   D+ GWL T                   +LI   G  + PAE+EA+LLTH  V++A V  + D+  GE+PAA +V   + K  E+++     S++A YK     HFVD +P++ S K+ R  LK K
Sbjct:  334 EIMVKGANVMKGYLYREESTAAAFDQ-GWLKTGDIGYVDEEGFLFVLDRRSDLIISGGENIYPAEIEAVLLTHSHVKEAGVTGIDDDRWGEVPAAFLV--TDHKIPENELYALCESHLAKYKWPASFHFVDELPRNASNKLQRHRLKSK 479          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_PONAB (Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            ELC+R  CVM GY+   ++T   +D++ W  T                  K++I   G  + PAELE    THP V++  VV + D+  GE   AC+ +    + + ++I  F    ++ +K  R + FV   P + SGKI +  L+++M
Sbjct:  460 ELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGKISHFKIPRYIVFVTNYPLTISGKIQKFKLREQM 609          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_MACFA (Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            ELC+R  CVM GY+   ++T   +D++ W  T                  K++I   G  + PAELE    THP V++  VV + D+  GE   AC+ +    + + +++  F    ++ +K  R + FV   P + SGKI +  L+++M
Sbjct:  463 ELCIRGYCVMLGYWGEPQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTAEEMKAFCKGKISHFKIPRYIVFVTNYPLTTSGKIQKFKLREQM 612          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_BOVIN (Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            ELC+R  CVM GY+   ++T   I ++ W  T                  K++I   G  + PAELE    THP V++  VV + D+  GE   AC+ +    K + ++I  F    ++ +K  R + FV   P + SGKI +  L+++M
Sbjct:  460 ELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICACIRLKEGEKTTAEEIKAFCKGKISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQM 609          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 50/154 (32.47%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            ELCV+   VM GY+   + T   I K+GWLHT                  K++I   GF V P E+E +++ H  V++ A V +P   +GE     VV    A  ++D ++ F   ++  YK  + + F + +PKS+ GKI+RR L+D+   K+
Sbjct:  406 ELCVKGPQVMLGYWQRPDATDEII-KDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL-TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKV 557          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 50/154 (32.47%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  110 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 571
            ELCV+   VM GY+   + T   I K+GWLHT                  K++I   GF V P E+E +++ H  V++ A V +P   +GE     VV    A  ++D ++ F   ++  YK  + + F + +PKS+ GKI+RR L+D+   K+
Sbjct:  406 ELCVKGPQVMLGYWQRPDATDEII-KDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL-TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKV 557          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
ACSF2_MOUSE3.687e-1830.97Acyl-CoA synthetase family member 2, mitochondrial... [more]
MENE_BACC14.816e-1833.122-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
YNGI_BACSU8.214e-1831.58Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]
4CLL2_ORYSJ1.073e-1739.674-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
MENE_BACP21.401e-1736.242-succinylbenzoate--CoA ligase OS=Bacillus pumilus... [more]
ACSF2_PONAB6.954e-1730.00Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_MACFA6.954e-1729.33Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_BOVIN9.082e-1730.67Acyl-CoA synthetase family member 2, mitochondrial... [more]
LCFA_SALTY2.642e-1632.47Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI2.642e-1632.47Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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