CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 43/156 (27.56%), Postives = 83/156 (53.21%), Query Frame = -2
Query:  107 ELCVRSQCVMQGYYNNEEETARTIDKN-GWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 571
            E+ +R + V  GY NN +       K   +  T                 IKELI   G +++P EL+ I+L+HP +++A    +PD+  G++  A +V+    K + +++++F+  ++A++K    ++FVD +PK+ +GKI RR++ +   +  R
Sbjct:  383 EVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAETFAKSSR 538          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_HUMAN (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  122 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 571
            ELC+R  CVM GY+   ++T   +D++ W  T                  K++I   G  + PAELE    THP V++  VV + D+  GE   AC+ +    + + ++I  F    ++ +K  + + FV   P + SGKI +  L+++M
Sbjct:  460 ELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGKISHFKIPKYIVFVTNYPLTISGKIQKFKLREQM 609          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = -2
Query:  113 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 571
            E+ V+   V +GY+  E+ T  TI  +GWLHT                   +LI   G  + PA++E +LL+HP V +A VV   DE  G++P A VV     + +E++++ F    +A YK  + ++F+  +P++ S K++RR L+  + EK
Sbjct:  332 EIVVKGPNVTRGYFKREDATRETI-VDGWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPLVLEAGVVGKSDETWGQVPVAFVV--KAGQVTEEEMIHFCEEKLAKYKVPKAVYFLHELPRNASKKLLRRELRQLLEEK 481          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = -2
Query:  116 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 571
            E+ V+   VM+GY+N  EETA  + ++GWL T                  K++I   G+ + P E+E  L  H ++++  V  +PD   GE   A VV+   AK   +++  F  S +A YK  +   F   +PK+  GKI+RR L ++  E
Sbjct:  405 EIIVKGPQVMKGYWNKPEETAAVL-RDGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLEEETE 555          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: ACSF2_DANRE (Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = -2
Query:  125 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 571
            EL +R  CVM  Y+ +EE+T   I K+ W  T                 IK+LI   G  + PAE+E  L THP + +A VV + DE  GE   AC+ +    + + ++I  +    +A YK  R + FV   P + +GKI +  L+++
Sbjct:  451 ELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRLKEGQECTVEEIKAYCKGKIAHYKVPRYILFVQDYPLTITGKIQKHKLRER 599          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = -2
Query:  131 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+ V+   V +GY+   E TA+ I + GW  T                   +LI   G  V PAE+EA+LL+HP VE+A V  + +E  G++P A V +   A   E  +  F    +A YK    ++FVD +P++ + K++RR LK
Sbjct:  335 EIVVKGPNVTKGYWQRPEATAQAI-RGGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSHPDVEEAGVTGVENETWGQVPYAFVRLKRGASPDEAALRAFCRERLAKYKVPARIYFVDELPRNAAQKLLRRELK 480          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_GEOSW (2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70) GN=menE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 46/147 (31.29%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  131 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+ V+   V +GY +  + TA+ I + GW +T                   +LI   G  V PAE+EA+LL+H +VE+A V  + DE  G++P A V        + + +  F  +++A YK  + ++FVD +P++ S K++R  LK
Sbjct:  336 EIVVKGPNVTKGYLHRPDATAKAI-RGGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFVKRKRGYSVTVEQLKQFCQAHLAKYKIPKQIYFVDELPRNASQKLLRHQLK 481          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: FAT2_SCHPO (Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe GN=SPCC1827.03c PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 44/148 (29.73%), Postives = 75/148 (50.68%), Query Frame = -2
Query:  128 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 571
            E+CVR   V +GY NN      +  K+ +  T                 IKEL+   G +++PAE++A+L+ HP V +A   ++PDE+ G+   A +        +   + D++   VA +K  +  +F D IPK+ +GK+ RR++ D
Sbjct:  355 EICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTPKQLHDYLEQKVAAFKIPKKFYFTDRIPKTATGKVQRRLVCD 502          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 46/146 (31.51%), Postives = 77/146 (52.74%), Query Frame = -2
Query:  134 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 571
            E+ V+   VM+GY  NE     + + +GW  T                   +LI   G  + PAE+EA+LL+HP+V +A V  + D+  G++P A +V   ++   E+++ +F    +A+YK  +  HFVD +P++ S K+MR  L
Sbjct:  336 EITVKGPTVMKGYLKNEAANKDSFN-DGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAGVKGVDDKTWGKVPHAYLV--ADSPVDEEELSEFCKERLASYKVPKAFHFVDRLPRNASNKLMRHKL 478          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_PROSL (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus sp. (strain LE138) GN=caiC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = -2
Query:  131 ELCVRSQC---VMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+CV+ +    + + YYN  + T + ++ +GWLHT                    +IK  G  V+  E+E I+ +HP ++D AV+ +PD+   E   A VV+      SE+    F   N+A +K    + F  G+P++ SGK++++ L+
Sbjct:  369 EICVKGEAGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYRDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
FAT2_YEAST2.642e-1627.56Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
ACSF2_HUMAN2.642e-1629.33Acyl-CoA synthetase family member 2, mitochondrial... [more]
MENE_BACCN3.451e-1632.032-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
LCFA_BACSU3.451e-1631.58Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
ACSF2_DANRE4.507e-1632.21Acyl-CoA synthetase family member 2, mitochondrial... [more]
MENE_GEOKA7.688e-1633.332-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]
MENE_GEOSW1.713e-1531.292-succinylbenzoate--CoA ligase OS=Geobacillus sp. ... [more]
FAT2_SCHPO2.237e-1529.73Putative peroxisomal-coenzyme A synthetase OS=Schi... [more]
MENE_BACLD2.921e-1531.512-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
CAIC_PROSL2.921e-1528.67Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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